Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 5.5e-25 117.1 70 100.0
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 5.5e-25 117.1 70 100.0
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 5.5e-25 117.1 70 100.0
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 5.5e-25 117.1 70 100.0
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 5.5e-25 117.1 70 100.0
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 3.3e-22 107.8 70 94.3
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 9.1e-20 99.8 71 90.1
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 2.6e-19 98.2 71 87.3
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 1.0e-18 96.3 59 96.6
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 5.5e-17 90.5 68 79.4
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 1.6e-16 89.0 71 83.1
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 1.6e-16 89.0 71 83.1
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 8.0e-16 86.7 64 78.1
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 6.7e-15 83.6 70 78.6
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 3.3e-14 81.3 63 76.2
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 1.3e-13 79.3 64 73.4
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 2.2e-13 78.6 73 75.3
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 6.3e-13 77.0 59 81.4
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 1.8e-12 75.5 66 72.7
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 4.1e-12 74.3 70 67.1
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 5.3e-12 73.9 63 76.2
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 5.3e-12 73.9 63 76.2
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 1.2e-11 72.8 57 75.4
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 1.6e-11 72.4 58 77.6
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 1.6e-11 72.4 70 72.9
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 1.6e-11 72.4 65 67.7
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 2.0e-11 72.0 53 79.2
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 2.6e-11 71.6 65 66.2
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 2.6e-11 71.6 66 66.7
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 5.9e-11 70.5 63 68.3
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 7.7e-11 70.1 63 66.7
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 1.7e-10 68.9 66 66.7
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 2.2e-10 68.6 70 70.0
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 3.8e-10 67.8 66 65.2
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 5.0e-10 67.4 64 62.5
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 5.0e-10 67.4 64 62.5
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 5.0e-10 67.4 63 66.7
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 6.5e-10 67.0 70 65.7
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 1.1e-09 66.2 65 60.0
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 1.5e-09 65.9 70 67.1
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 2.5e-09 65.1 66 63.6
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 3.2e-09 64.7 65 61.5
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 5.5e-09 63.9 63 65.1
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 7.2e-09 63.5 66 59.1
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 9.4e-09 63.2 60 66.7
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 9.4e-09 63.2 67 62.7
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 2.1e-08 62.0 59 62.7
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 2.1e-08 62.0 64 57.8
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 2.7e-08 61.6 50 72.0
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 3.6e-08 61.2 59 69.5
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 6.1e-08 60.5 42 83.3
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 6.1e-08 60.5 66 60.6
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 8.0e-08 60.1 43 79.1
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 1.4e-07 59.3 70 58.6
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 1.8e-07 58.9 58 63.8
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 1.8e-07 58.9 64 56.2
Ah.03g142930 Amaranthus hybridus HOM05D007812 ORTHO05D009912 3.0e-07 58.2 68 60.3
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 3.0e-07 58.2 41 80.5
Glyma.07G009200 Glycine max HOM05D007812 ORTHO05D009912 6.7e-07 57.0 66 57.6
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 6.7e-07 57.0 37 86.5
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 6.7e-07 57.0 37 86.5
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 6.7e-07 57.0 37 86.5
Nn1g04968 Nelumbo nucifera HOM05D007812 ORTHO05D009912 6.7e-07 57.0 55 67.3
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 8.8e-07 56.6 63 58.7
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 8.8e-07 56.6 36 83.3
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 1.2e-06 56.2 64 59.4
PGSC0003DMG400004846 Solanum tuberosum HOM05D007812 ORTHO05D009912 1.2e-06 56.2 58 56.9
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 1.5e-06 55.8 59 59.3
CAN.G825.36 Capsicum annuum HOM05D007812 ORTHO05D009912 2.0e-06 55.5 56 57.1
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 2.0e-06 55.5 42 76.2
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 3.3e-06 54.7 36 80.6
Hund18713 Selenicereus undatus HOM05D007812 ORTHO05D009912 3.3e-06 54.7 65 53.8
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 3.3e-06 54.7 38 78.9
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 4.4e-06 54.3 36 77.8
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 7.5e-06 53.5 38 76.3


User provided reference genes

Program Settings