Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34010H Brassica oleracea HOM05D006370 ORTHO05D008324 3.6e-64 248.1 122 100.0
BolC5t34018H Brassica oleracea HOM05D006370 ORTHO05D008324 3.6e-64 248.1 122 100.0
C05p53410 Brassica napus HOM05D006370 ORTHO05D008324 2.2e-61 238.8 122 97.5
BcaC05g29112 Brassica carinata HOM05D006370 ORTHO05D008324 1.7e-53 212.6 110 97.3
BcaC02g09577 Brassica carinata HOM05D006370 ORTHO05D008324 1.2e-35 153.3 115 79.1
BolC4t26007H Brassica oleracea HOM05D006370 ORTHO05D008324 1.2e-35 153.3 115 79.1
A04p10640 Brassica napus HOM05D006370 ORTHO05D008324 2.1e-35 152.5 115 76.5
C04p44360 Brassica napus HOM05D006370 ORTHO05D008324 2.3e-34 149.1 114 77.2
BcaB06g27082 Brassica carinata HOM05D006370 ORTHO05D008324 8.6e-34 147.1 115 73.9
Sp7g04690 Schrenkiella parvula HOM05D006370 ORTHO05D008324 1.7e-29 132.9 112 64.3
AT5G37480 Arabidopsis thaliana HOM05D006370 ORTHO05D008324 1.4e-23 113.2 104 60.6
Thhalv10028111m.g Eutrema salsugineum HOM05D006370 ORTHO05D008324 1.8e-23 112.8 90 64.4
CARHR215460 Cardamine hirsuta HOM05D006370 ORTHO05D008324 7.1e-20 100.9 105 55.2
Aa31LG9G17570 Aethionema arabicum HOM05D006370 ORTHO05D008324 1.2e-19 100.1 111 56.8
Carub.0007s3265 Capsella rubella HOM05D006370 ORTHO05D008324 2.7e-19 99.0 103 55.3
THA.LOC104800403 Tarenaya hassleriana HOM05D006370 ORTHO05D008324 3.0e-18 95.5 108 50.0
THA.LOC104800075 Tarenaya hassleriana HOM05D006370 ORTHO05D008324 5.1e-18 94.7 108 49.1
THA.LOC104823775 Tarenaya hassleriana HOM05D006370 ORTHO05D008324 2.5e-17 92.4 102 52.9
PGR142G0714 Punica granatum HOM05D006370 ORTHO05D008324 6.2e-16 87.8 100 51.0
Duzib177G0489 Durio zibethinus HOM05D006370 ORTHO05D008324 1.4e-15 86.7 93 54.8
COL.COLO4_28633 Corchorus olitorius HOM05D006370 ORTHO05D008324 3.1e-15 85.5 85 55.3
Cfa017718 Carpinus fangiana HOM05D006370 ORTHO05D008324 1.5e-14 83.2 87 50.6
Duzib128G1808 Durio zibethinus HOM05D006370 ORTHO05D008324 2.0e-14 82.8 93 53.8
Gohir.D11G241500 Gossypium hirsutum HOM05D006370 ORTHO05D008324 2.6e-14 82.4 87 52.9
Gorai.007G255600 Gossypium raimondii HOM05D006370 ORTHO05D008324 2.6e-14 82.4 87 52.9
Thecc.05G242700 Theobroma cacao HOM05D006370 ORTHO05D008324 2.6e-14 82.4 88 53.4
Aqoxy1G00517 Aquilegia oxysepala HOM05D006370 ORTHO05D008324 4.5e-14 81.6 103 46.6
Gohir.A11G229500 Gossypium hirsutum HOM05D006370 ORTHO05D008324 7.6e-14 80.9 87 52.9
Haze_20411 Corylus avellana HOM05D006370 ORTHO05D008324 1.7e-13 79.7 94 47.9
MD12G1010600 Malus domestica HOM05D006370 ORTHO05D008324 1.7e-13 79.7 84 53.6
Prupe.7G012600 Prunus persica HOM05D006370 ORTHO05D008324 2.2e-13 79.3 79 54.4
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 3.8e-13 78.6 77 51.9
Atru.chr2.1510 Acer truncatum HOM05D006370 ORTHO05D008324 4.9e-13 78.2 77 53.2
Lsat_1_v5_gn_1_55401 Lactuca sativa HOM05D006370 ORTHO05D008324 4.9e-13 78.2 84 51.2
Sc07g0007490 Simmondsia chinensis HOM05D006370 ORTHO05D008324 1.1e-12 77.0 81 53.1
PSO063G0933 Papaver somniferum HOM05D006370 ORTHO05D008324 2.4e-12 75.9 77 51.9
CDE10G0775 Ceratophyllum demersum HOM05D006370 ORTHO05D008324 3.2e-12 75.5 66 54.5
AUR62042155 Chenopodium quinoa HOM05D006370 ORTHO05D008324 4.2e-12 75.1 100 46.0
MD14G1007700 Malus domestica HOM05D006370 ORTHO05D008324 5.4e-12 74.7 59 62.7
Nn2g14550 Nelumbo nucifera HOM05D006370 ORTHO05D008324 5.4e-12 74.7 82 50.0
Zm00001eb057190 Zea mays HOM05D006370 ORTHO05D008324 9.3e-12 73.9 87 47.1
CiPaw.09G166900 Carya illinoinensis HOM05D006370 ORTHO05D008324 1.2e-11 73.6 96 46.9
FvH4_1g28570 Fragaria vesca HOM05D006370 ORTHO05D008324 1.2e-11 73.6 83 53.0
FAN19G0680 Fragaria x ananassa HOM05D006370 ORTHO05D008324 1.2e-11 73.6 83 53.0
FAN26G3131 Fragaria x ananassa HOM05D006370 ORTHO05D008324 1.2e-11 73.6 83 53.0
HanXRQChr01g0026941 Helianthus annuus HOM05D006370 ORTHO05D008324 1.2e-11 73.6 81 51.9
PSO339G2906 Papaver somniferum HOM05D006370 ORTHO05D008324 1.2e-11 73.6 83 48.2
TWI34G0169 Tripterygium wilfordii HOM05D006370 ORTHO05D008324 1.2e-11 73.6 92 51.1
EL10Ac5g11708 Beta vulgaris HOM05D006370 ORTHO05D008324 1.6e-11 73.2 86 46.5
Ciclev10022640m.g Citrus clementina HOM05D006370 ORTHO05D008324 1.6e-11 73.2 83 48.2
Eucgr.K01528 Eucalyptus grandis HOM05D006370 ORTHO05D008324 1.6e-11 73.2 89 48.3
AUR62043361 Chenopodium quinoa HOM05D006370 ORTHO05D008324 2.1e-11 72.8 83 48.2
Hma1.2p1_0526F.1_g172840 Hydrangea macrophylla HOM05D006370 ORTHO05D008324 2.1e-11 72.8 77 50.6
TWI60G1203 Tripterygium wilfordii HOM05D006370 ORTHO05D008324 2.7e-11 72.4 106 44.3
Dinv25046 Davidia involucrata HOM05D006370 ORTHO05D008324 4.6e-11 71.6 109 40.4
HPP92_022911 Vanilla planifolia HOM05D006370 ORTHO05D008324 4.6e-11 71.6 86 45.3
TAR623G1163 Trochodendron aralioides HOM05D006370 ORTHO05D008324 1.0e-10 70.5 110 39.1
Actinidia37817 Actinidia chinensis HOM05D006370 ORTHO05D008324 1.3e-10 70.1 98 46.9
ECA248G1067 Erigeron canadensis HOM05D006370 ORTHO05D008324 1.3e-10 70.1 100 43.0
FAN28G0334 Fragaria x ananassa HOM05D006370 ORTHO05D008324 1.3e-10 70.1 83 51.8
TAR633G0247 Trochodendron aralioides HOM05D001480 ORTHO05D001331 1.8e-10 69.7 71 50.7
GSVIVG01022435001 Vitis vinifera HOM05D006370 ORTHO05D008324 1.8e-10 69.7 76 51.3
Eucgr.K01533 Eucalyptus grandis HOM05D006370 ORTHO05D008324 2.3e-10 69.3 91 45.1
Lj1A1073T41 Lonicera japonica HOM05D006370 ORTHO05D008324 2.3e-10 69.3 99 48.5
Manes.09G136900 Manihot esculenta HOM05D006370 ORTHO05D008324 3.0e-10 68.9 108 43.5
Sabra13G0056900 Salix brachista HOM05D006370 ORTHO05D008324 3.0e-10 68.9 62 58.1
MSTRG.6248 Avicennia marina HOM05D006370 ORTHO05D008324 5.1e-10 68.2 81 51.9
Dinv05555 Davidia involucrata HOM05D006370 ORTHO05D008324 5.1e-10 68.2 79 50.6
Aqoxy1G00515 Aquilegia oxysepala HOM05D006370 ORTHO05D008324 6.7e-10 67.8 70 50.0
Aqoxy1G00516 Aquilegia oxysepala HOM05D006370 ORTHO05D008324 6.7e-10 67.8 70 51.4
Sabra13G0057100 Salix brachista HOM05D006370 ORTHO05D008324 6.7e-10 67.8 62 56.5
Potri.013G065200 Populus trichocarpa HOM05D006370 ORTHO05D008324 8.7e-10 67.4 61 57.4
CANSAT01G3230 Cannabis sativa HOM05D006370 ORTHO05D008324 1.1e-09 67.0 96 47.9
Mapoly0066s0112 Marchantia polymorpha HOM05D006370 ORTHO05D008324 1.1e-09 67.0 86 43.0
Cpa.g.sc161.33 Carica papaya HOM05D006370 ORTHO05D008324 2.5e-09 65.9 99 43.4
Os03g0748600 Oryza sativa ssp. japonica HOM05D006370 ORTHO05D008324 2.5e-09 65.9 67 46.3
Rhsim03G0049800 Rhododendron simsii HOM05D006370 ORTHO05D008324 2.5e-09 65.9 80 50.0
Phvul.004G050600 Phaseolus vulgaris HOM05D006370 ORTHO05D008324 3.3e-09 65.5 108 39.8
vmacro07654 Vaccinium macrocarpon HOM05D006370 ORTHO05D008324 4.3e-09 65.1 62 56.5
Cc10_g11540 Coffea canephora HOM05D006370 ORTHO05D008324 7.4e-09 64.3 89 46.1
Lalb_Chr06g0174141 Lupinus albus HOM05D006370 ORTHO05D008324 7.4e-09 64.3 78 46.2
SEGI_24903 Sequoiadendron giganteum HOM05D006370 ORTHO05D008324 9.6e-09 63.9 80 46.2
RcHm_v2.0_Chr3g0496161 Rosa chinensis HOM05D006370 ORTHO05D008324 1.3e-08 63.5 80 48.8
Lj2g0006862 Lotus japonicus HOM05D006370 ORTHO05D008324 1.6e-08 63.2 89 47.2
Solyc10g081480.2 Solanum lycopersicum HOM05D006370 ORTHO05D008324 4.8e-08 61.6 93 36.6
arahy.Tifrunner.gnm1.ann1.AZ5GA5 Arachis hypogaea HOM05D006370 ORTHO05D008324 8.1e-08 60.8 118 39.0
PGSC0003DMG400028217 Solanum tuberosum HOM05D006370 ORTHO05D008324 8.1e-08 60.8 94 36.2
arahy.Tifrunner.gnm1.ann1.ZL000T Arachis hypogaea HOM05D006370 ORTHO05D008324 1.1e-07 60.5 111 40.5
Medtr6g027600 Medicago truncatula HOM05D006370 ORTHO05D008324 1.8e-07 59.7 88 40.9
Nitab4.5_0000613g0010 Nicotiana tabacum HOM05D006370 ORTHO05D008324 1.8e-07 59.7 94 37.2
Glyma.19G010300 Glycine max HOM05D006370 ORTHO05D008324 2.4e-07 59.3 70 45.7
Sopen10g031990 Solanum pennellii HOM05D006370 ORTHO05D008324 3.1e-07 58.9 65 46.2
SMO196G0263 Selaginella moellendorffii HOM05D006370 ORTHO05D008324 4.0e-07 58.5 74 45.9
unitig_744.g24144 Utricularia gibba HOM05D006370 ORTHO05D000703 4.0e-07 58.5 95 40.0
VMungo0540G0157 Vigna mungo HOM05D006370 ORTHO05D008324 4.0e-07 58.5 76 42.1
Glyma.13G170200 Glycine max HOM05D006370 ORTHO05D008324 9.0e-07 57.4 80 45.0
Mapoly0007s0154 Marchantia polymorpha HOM05D006370 ORTHO05D008324 1.5e-06 56.6 74 43.2
Pp3c2_15250 Physcomitrium patens HOM05D006370 ORTHO05D008324 1.5e-06 56.6 102 34.3
Migut.J01529 Erythranthe guttata HOM05D006370 ORTHO05D008324 2.6e-06 55.8 91 44.0
Pp3c22_7490 Physcomitrium patens HOM05D006370 ORTHO05D008324 3.4e-06 55.5 84 36.9


User provided reference genes

Program Settings