Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33914H Brassica oleracea HOM05D006614 ORTHO05D008217 0.0e+00 1183.3 612 100.0
C05p52250 Brassica napus HOM05D006614 ORTHO05D008217 0.0e+00 1161.7 612 96.4
A05p34510 Brassica napus HOM05D006614 ORTHO05D008217 0.0e+00 1151.0 612 95.6
BraA05t22271Z Brassica rapa HOM05D006614 ORTHO05D008217 0.0e+00 1151.0 612 95.6
Sp3g13110 Schrenkiella parvula HOM05D006614 ORTHO05D008217 4.2e-312 1074.3 616 89.6
Thhalv10022322m.g Eutrema salsugineum HOM05D006614 ORTHO05D008217 8.9e-305 1049.7 611 89.5
BcaB06g25331 Brassica carinata HOM05D006614 ORTHO05D008217 1.2e-304 1049.3 617 90.0
BcaB06g29517 Brassica carinata HOM05D006614 ORTHO05D008217 1.6e-301 1038.9 612 89.1
AT3G14900 Arabidopsis thaliana HOM05D006614 ORTHO05D008217 2.1e-298 1028.5 619 87.7
Carub.0003s1456 Capsella rubella HOM05D006614 ORTHO05D008217 5.8e-296 1020.4 618 87.1
AL3G27220 Arabidopsis lyrata HOM05D006614 ORTHO05D008217 1.3e-292 1009.2 618 86.4
CARHR089840 Cardamine hirsuta HOM05D006614 ORTHO05D008217 2.5e-291 1005.0 626 86.1
Aa31LG8G2110 Aethionema arabicum HOM05D006614 ORTHO05D008217 3.8e-255 884.8 629 73.8
THA.LOC104822565 Tarenaya hassleriana HOM05D006614 ORTHO05D008217 3.0e-252 875.2 625 74.2
Gohir.D07G233600 Gossypium hirsutum HOM05D006614 ORTHO05D008217 1.9e-198 696.4 613 62.0
Gorai.001G269000 Gossypium raimondii HOM05D006614 ORTHO05D008217 5.6e-198 694.9 612 61.3
Cpa.g.sc77.8 Carica papaya HOM05D006614 ORTHO05D008217 7.3e-198 694.5 615 60.5
Duzib213G0629 Durio zibethinus HOM05D006614 ORTHO05D008217 8.1e-197 691.0 611 61.5
COL.COLO4_17543 Corchorus olitorius HOM05D006614 ORTHO05D008217 1.4e-196 690.3 614 61.4
Manes.15G094800 Manihot esculenta HOM05D006614 ORTHO05D008217 1.8e-196 689.9 621 59.3
Gohir.A07G226400 Gossypium hirsutum HOM05D006614 ORTHO05D008217 3.1e-196 689.1 612 60.9
FvH4_3g18290 Fragaria vesca HOM05D006614 ORTHO05D008217 4.0e-196 688.7 619 59.1
RcHm_v2.0_Chr5g0030921 Rosa chinensis HOM05D006614 ORTHO05D008217 8.9e-196 687.6 624 61.4
PGR142G0467 Punica granatum HOM05D006614 ORTHO05D008217 1.5e-195 686.8 618 58.7
Thecc.07G117000 Theobroma cacao HOM05D006614 ORTHO05D008217 5.8e-195 684.9 612 59.8
FAN16G2994 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.7e-194 683.3 619 59.0
FAN11G1715 Fragaria x ananassa HOM05D006614 ORTHO05D008217 8.3e-194 681.0 619 59.0
DCAR_021025 Daucus carota HOM05D006614 ORTHO05D008217 1.6e-192 676.8 641 57.4
Migut.M00728 Erythranthe guttata HOM05D006614 ORTHO05D008217 4.7e-189 665.2 612 58.7
Peaxi162Scf00111g01423 Petunia axillaris HOM05D006614 ORTHO05D008217 6.2e-189 664.8 612 57.0
Medtr5g080700 Medicago truncatula HOM05D006614 ORTHO05D008217 1.4e-188 663.7 618 58.9
Glyma.14G066300 Glycine max HOM05D006614 ORTHO05D008217 1.8e-188 663.3 614 59.9
Psat2g179000 Pisum sativum HOM05D006614 ORTHO05D008217 1.8e-188 663.3 624 59.6
Sc16g0007600 Simmondsia chinensis HOM05D006614 ORTHO05D008217 6.8e-188 661.4 606 60.7
Nitab4.5_0006953g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 8.9e-188 661.0 615 56.3
LjContig00141g0022614 Lotus japonicus HOM05D006614 ORTHO05D008217 1.2e-187 660.6 627 59.0
Ah.09g230960 Amaranthus hybridus HOM05D006614 ORTHO05D008217 3.4e-187 659.1 634 59.5
CSS0027020 Camellia sinensis var. sinensis HOM05D006614 ORTHO05D008217 1.7e-186 656.8 625 57.0
HanXRQChr15g0476201 Helianthus annuus HOM05D006614 ORTHO05D008217 3.8e-186 655.6 618 58.1
TAR375G0652 Trochodendron aralioides HOM05D006614 ORTHO05D008217 4.9e-186 655.2 647 55.0
TPR.G25839 Trifolium pratense HOM05D006614 ORTHO05D008217 8.4e-186 654.4 625 58.1
Actinidia12578 Actinidia chinensis HOM05D006614 ORTHO05D008217 2.4e-185 652.9 608 56.4
Atru.chr2.2145 Acer truncatum HOM05D006614 ORTHO05D008217 5.4e-185 651.7 626 55.6
Phvul.008G231100 Phaseolus vulgaris HOM05D006614 ORTHO05D008217 2.1e-184 649.8 618 59.5
GSVIVG01014198001 Vitis vinifera HOM05D006614 ORTHO05D008217 2.1e-184 649.8 612 55.6
Nitab4.5_0003565g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 7.8e-184 647.9 636 54.6
Prupe.4G164700 Prunus persica HOM05D006614 ORTHO05D008217 7.8e-184 647.9 624 59.0
TWI38G0322 Tripterygium wilfordii HOM05D006614 ORTHO05D008217 7.8e-184 647.9 614 58.5
VMungo0647G0674 Vigna mungo HOM05D006614 ORTHO05D008217 1.7e-183 646.7 610 61.3
Sed0001562 Sechium edule HOM05D006614 ORTHO05D008217 2.3e-183 646.4 611 57.4
Ca_05900_v3 Cicer arietinum L. HOM05D006614 ORTHO05D008217 3.0e-183 646.0 625 59.0
Hma1.2p1_0290F.1_g114830 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 5.6e-182 641.7 611 56.5
MD03G1243600 Malus domestica HOM05D006614 ORTHO05D008217 5.6e-182 641.7 625 57.3
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 9.6e-182 641.0 616 55.7
Lj1P829T27 Lonicera japonica HOM05D006614 ORTHO05D008217 1.2e-181 640.6 625 58.9
CiPaw.11G160300 Carya illinoinensis HOM05D006614 ORTHO05D008217 2.1e-181 639.8 631 58.0
Cc05_g11080 Coffea canephora HOM05D006614 ORTHO05D008217 2.1e-181 639.8 620 55.8
Potri.001G390600 Populus trichocarpa HOM05D006614 ORTHO05D008217 4.7e-181 638.6 624 54.8
CANSAT35G1108 Cannabis sativa HOM05D006614 ORTHO05D008217 3.1e-180 636.0 629 55.2
ClCG11G017450 Citrullus lanatus HOM05D006614 ORTHO05D008217 5.2e-180 635.2 618 56.8
PGSC0003DMG400046940 Solanum tuberosum HOM05D006614 ORTHO05D008217 4.4e-179 632.1 621 56.2
Solyc07g062440.1 Solanum lycopersicum HOM05D006614 ORTHO05D008217 1.3e-178 630.6 622 56.3
Sopen07g030680 Solanum pennellii HOM05D006614 ORTHO05D008217 3.8e-178 629.0 622 56.1
Thecc.07G116400 Theobroma cacao HOM05D006614 ORTHO05D008217 1.4e-177 627.1 527 62.0
vmacro23466 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 1.4e-177 627.1 618 54.0
EL10Ac8g18445 Beta vulgaris HOM05D006614 ORTHO05D008217 2.4e-177 626.3 627 56.8
Lalb_Chr17g0346371 Lupinus albus HOM05D006614 ORTHO05D008217 2.4e-177 626.3 560 58.6
arahy.Tifrunner.gnm1.ann1.087IU6 Arachis hypogaea HOM05D006614 ORTHO05D008217 1.6e-176 623.6 629 56.9
Rhsim06G0208100 Rhododendron simsii HOM05D006614 ORTHO05D008217 3.5e-176 622.5 617 55.1
arahy.Tifrunner.gnm1.ann1.UH0U35 Arachis hypogaea HOM05D006614 ORTHO05D008217 2.3e-175 619.8 629 56.8
MSTRG.6677 Avicennia marina HOM05D006614 ORTHO05D008217 3.0e-175 619.4 624 53.7
CsaV3_4G033120 Cucumis sativus L. HOM05D006614 ORTHO05D008217 3.9e-175 619.0 611 53.5
SalBow5G0223 Salvia bowleyana HOM05D006614 ORTHO05D008217 7.3e-174 614.8 607 54.9
MELO3C025640.2 Cucumis melo HOM05D006614 ORTHO05D008217 6.2e-173 611.7 611 53.4
CAN.G375.15 Capsicum annuum HOM05D006614 ORTHO05D008217 1.4e-172 610.5 617 53.3
CDE12G0873 Ceratophyllum demersum HOM05D006614 ORTHO05D008217 1.4e-172 610.5 594 56.4
SGA_v2.0_scaffold34G13782 Striga asiatica HOM05D006614 ORTHO05D008217 2.4e-172 609.8 555 59.5
Cfa019566 Carpinus fangiana HOM05D006614 ORTHO05D008217 3.1e-172 609.4 576 59.4
Oeu061358.1 Olea europaea HOM05D006614 ORTHO05D008217 4.0e-172 609.0 619 56.4
ECA240G1555 Erigeron canadensis HOM05D006614 ORTHO05D008217 4.5e-171 605.5 623 54.7
Haze_09323 Corylus avellana HOM05D006614 ORTHO05D008217 9.9e-171 604.4 569 57.8
PSO421G0295 Papaver somniferum HOM05D006614 ORTHO05D008217 2.9e-170 602.8 553 55.3
QL12p002313 Quercus lobata HOM05D006614 ORTHO05D008217 4.9e-170 602.1 550 60.5
PSO063G1163 Papaver somniferum HOM05D006614 ORTHO05D008217 7.1e-169 598.2 559 55.5
unitig_747.g21586 Utricularia gibba HOM05D006614 ORTHO05D008217 1.2e-168 597.4 548 56.6
Aqoxy1G00012 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 3.3e-166 589.3 556 60.1
AUR62021467 Chenopodium quinoa HOM05D006614 ORTHO05D008217 2.6e-163 579.7 626 52.6
MBI12_g10753_MAGBIO Magnolia biondii HOM05D006614 ORTHO05D008217 1.3e-157 560.8 484 58.5
HPP92_015867 Vanilla planifolia HOM05D006614 ORTHO05D008217 1.1e-156 557.8 585 49.6
FAN25G0567 Fragaria x ananassa HOM05D006614 ORTHO05D008217 5.3e-156 555.4 620 51.9
AUR62010952 Chenopodium quinoa HOM05D006614 ORTHO05D008217 6.9e-156 555.1 632 49.1
ATR0810G004 Amborella trichopoda HOM05D006614 ORTHO05D008217 2.5e-145 520.0 575 52.2
Hma1.2p1_0290F.1_g114840 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 1.9e-142 510.4 504 54.6
vmacro11940 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 1.3e-141 507.7 550 50.4
Psat0s3066g0080 Pisum sativum HOM05D006614 ORTHO05D008217 4.5e-139 499.2 438 58.9
Zm00001eb078480 Zea mays HOM05D006614 ORTHO05D008217 4.2e-137 492.7 544 49.4
Os04g0497900 Oryza sativa ssp. japonica HOM05D006614 ORTHO05D008217 3.6e-136 489.6 552 49.8
Eucgr.K01881 Eucalyptus grandis HOM05D006614 ORTHO05D008217 2.6e-134 483.4 640 45.5
Sabra16G0256000 Salix brachista HOM05D006614 ORTHO05D008217 9.7e-134 481.5 373 60.3
Aqoxy3G00116 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 1.0e-111 408.3 425 55.5
Glyma.02G250300 Glycine max HOM05D006614 ORTHO05D008217 7.8e-99 365.5 343 60.9
Ciclev10023881m.g Citrus clementina HOM05D006614 ORTHO05D008217 1.9e-97 360.9 349 54.2
SEGI_22211 Sequoiadendron giganteum HOM05D006614 ORTHO05D008217 6.2e-80 302.8 538 35.7
AagrBONN_evm.TU.Sc2ySwM_228.5094 Anthoceros agrestis HOM05D006614 ORTHO05D008217 1.2e-46 192.2 456 34.4
Pp3c16_3160 Physcomitrium patens HOM05D006614 ORTHO05D008217 1.4e-44 185.3 556 33.1
SMO356G0760 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 2.7e-43 181.0 270 37.0
Mapoly0097s0086 Marchantia polymorpha HOM05D006614 ORTHO05D008217 4.8e-40 170.2 303 32.7
SMO356G0609 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 9.0e-39 166.0 479 32.6
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 6.3e-32 143.3 105 65.7
MD11G1263800 Malus domestica HOM05D006614 ORTHO05D008217 3.9e-26 124.0 91 62.6
Dinv02793 Davidia involucrata HOM05D006614 ORTHO05D008217 3.3e-25 120.9 82 68.3
Psat0s3066g0040 Pisum sativum HOM05D006614 ORTHO05D008217 1.1e-23 115.9 74 73.0
Cfa001947 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.2e-22 112.5 89 62.9
FAN21G3229 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.4e-20 105.5 84 60.7
HPP92_015860 Vanilla planifolia HOM05D006614 ORTHO05D008217 1.4e-20 105.5 68 63.2
CBR_g47994 Chara braunii HOM05D006614 ORTHO05D008217 6.1e-19 100.1 233 27.0
Aqoxy3G00115 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 7.4e-17 93.2 106 56.6


User provided reference genes

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