Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.6e-109 398.7 196 100.0
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 7.5e-96 354.0 189 94.2
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 2.4e-57 226.1 189 68.3
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 8.4e-55 217.6 189 65.6
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 6.4e-31 138.3 81 88.9
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 4.2e-30 135.6 81 87.7
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 3.3e-27 125.9 83 85.5
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 3.3e-27 125.9 83 85.5
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 1.1e-25 120.9 81 80.2
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.7e-23 113.6 84 76.2
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 9.3e-22 107.8 84 73.8
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 1.6e-21 107.1 86 72.1
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 3.5e-21 105.9 86 70.9
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 3.5e-21 105.9 86 70.9
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 3.5e-21 105.9 85 69.4
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 7.9e-21 104.8 85 72.9
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.8e-20 103.6 81 67.9
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.0e-20 102.8 81 66.7
BcaC03g15843 Brassica carinata HOM05D005852 ORTHO05D006688 3.9e-20 102.4 55 89.1
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 3.9e-20 102.4 81 67.9
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 5.1e-20 102.1 81 66.7
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.7e-20 101.7 81 66.7
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 6.7e-20 101.7 95 63.2
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 8.7e-20 101.3 81 66.7
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 8.7e-20 101.3 81 66.7
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.1e-19 100.9 81 65.4
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 1.5e-19 100.5 84 63.1
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 1.5e-19 100.5 81 65.4
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 1.9e-19 100.1 101 56.4
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 1.9e-19 100.1 81 65.4
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.9e-19 100.1 81 65.4
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.5e-19 99.8 81 66.7
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.5e-19 99.8 83 69.9
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 2.5e-19 99.8 81 66.7
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 3.3e-19 99.4 81 65.4
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.3e-19 99.4 81 66.7
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 4.3e-19 99.0 84 63.1
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 5.7e-19 98.6 80 65.0
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 7.4e-19 98.2 81 63.0
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 7.4e-19 98.2 81 61.7
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 7.4e-19 98.2 81 65.4
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 9.7e-19 97.8 81 64.2
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 9.7e-19 97.8 81 65.4
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 9.7e-19 97.8 81 65.4
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.3e-18 97.4 77 66.2
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.3e-18 97.4 77 66.2
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.3e-18 97.4 81 65.4
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.6e-18 97.1 80 66.2
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 1.6e-18 97.1 81 64.2
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 2.2e-18 96.7 81 64.2
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 2.2e-18 96.7 81 66.7
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 2.2e-18 96.7 81 64.2
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 2.2e-18 96.7 77 64.9
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 2.8e-18 96.3 81 64.2
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 4.8e-18 95.5 83 67.5
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 4.8e-18 95.5 83 67.5
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 4.8e-18 95.5 83 67.5
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 6.3e-18 95.1 80 65.0
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 6.3e-18 95.1 81 63.0
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 6.3e-18 95.1 83 63.9
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 8.2e-18 94.7 81 63.0
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 8.2e-18 94.7 81 63.0
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 8.2e-18 94.7 81 61.7
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 1.1e-17 94.4 83 66.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 1.1e-17 94.4 83 65.1
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.1e-17 94.4 81 63.0
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 1.4e-17 94.0 81 61.7
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.4e-17 94.0 81 61.7
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.8e-17 93.6 77 63.6
C02p58010 Brassica napus HOM05D009362 ORTHO05D039593 1.8e-17 93.6 48 93.8
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 1.8e-17 93.6 80 61.2
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.8e-17 93.6 80 61.2
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 2.4e-17 93.2 83 66.3
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 4.1e-17 92.4 80 63.8
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 4.1e-17 92.4 81 64.2
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 5.3e-17 92.0 77 66.2
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.3e-17 92.0 81 63.0
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.3e-17 92.0 81 63.0
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.3e-17 92.0 81 63.0
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 5.3e-17 92.0 81 61.7
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 6.9e-17 91.7 80 65.0
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 9.0e-17 91.3 81 64.2
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 9.0e-17 91.3 80 63.8
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.2e-16 90.9 80 62.5
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.2e-16 90.9 80 63.8
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.2e-16 90.9 77 64.9
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 1.2e-16 90.9 81 61.7
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.2e-16 90.9 81 61.7
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.2e-16 90.9 81 61.7
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.2e-16 90.9 82 64.6
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.5e-16 90.5 78 66.7
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 2.6e-16 89.7 84 63.1
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 2.6e-16 89.7 81 61.7
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.6e-16 89.7 80 61.2
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.6e-16 89.7 80 61.2
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 3.4e-16 89.4 80 65.0
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 5.9e-16 88.6 82 62.2
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 5.9e-16 88.6 81 60.5
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 5.9e-16 88.6 81 61.7
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.2e-15 86.7 77 59.7
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 2.2e-15 86.7 82 61.0
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 3.8e-15 85.9 77 62.3
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 3.8e-15 85.9 77 61.0
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.1e-14 84.3 77 63.6
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 3.2e-14 82.8 86 58.1
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 5.5e-14 82.0 86 59.3
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.2e-13 80.9 113 53.1
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.2e-13 80.9 88 59.1
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 2.1e-13 80.1 82 58.5
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 3.6e-13 79.3 80 57.5
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 4.6e-13 79.0 88 56.8
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 1.0e-12 77.8 89 53.9
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.0e-12 76.3 65 63.1
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 4.3e-11 72.4 82 51.2
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.8e-10 69.7 87 55.2
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 8.2e-10 68.2 89 50.6
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 8.2e-10 68.2 85 49.4
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.1e-09 67.8 83 51.8
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.1e-09 66.2 44 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 6.9e-09 65.1 38 81.6
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.0e-08 63.5 57 59.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.4e-08 62.8 78 48.7
A05p12590 Brassica napus HOM05D009362 ORTHO05D012051 1.3e-07 60.8 58 58.6
BraA05t20197Z Brassica rapa HOM05D009362 ORTHO05D012051 1.3e-07 60.8 58 58.6
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 3.2e-06 56.2 88 43.2


User provided reference genes

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