Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-39 166.0 83 100.0
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 1.2e-39 166.0 83 100.0
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 2.7e-39 164.9 83 98.8
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 2.7e-39 164.9 83 98.8
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 5.1e-38 160.6 83 96.4
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.3e-37 157.9 81 96.3
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.7e-36 154.5 81 93.8
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 6.9e-35 150.2 81 91.4
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 6.9e-35 150.2 81 91.4
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 6.9e-35 150.2 81 91.4
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 6.9e-35 150.2 81 91.4
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 6.9e-35 150.2 81 91.4
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 2.0e-34 148.7 81 90.1
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 2.6e-34 148.3 82 92.7
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 2.6e-34 148.3 83 92.8
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.4e-34 147.9 84 89.3
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 3.4e-34 147.9 82 91.5
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 3.4e-34 147.9 82 91.5
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 5.9e-34 147.1 80 92.5
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 7.7e-34 146.7 81 91.4
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 7.7e-34 146.7 81 90.1
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-33 144.8 81 90.1
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 7.9e-31 136.7 81 86.4
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.7e-28 129.0 81 82.7
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 4.8e-28 127.5 81 80.2
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 8.2e-28 126.7 81 79.0
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.8e-27 125.6 81 79.0
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.4e-27 125.2 81 77.8
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 2.4e-27 125.2 81 77.8
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 2.4e-27 125.2 81 77.8
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 2.4e-27 125.2 81 77.8
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.1e-27 124.4 81 77.8
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 9.1e-27 123.2 80 77.5
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.2e-26 122.9 80 76.2
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.2e-26 122.9 80 76.2
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.2e-26 122.9 80 76.2
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-26 122.9 81 76.5
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-26 122.5 81 76.5
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.6e-26 122.5 81 76.5
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.6e-26 122.5 81 76.5
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.6e-26 121.7 81 76.5
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 3.5e-26 121.3 81 76.5
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 4.5e-26 120.9 81 75.3
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 4.5e-26 120.9 81 75.3
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.2e-23 112.8 81 71.6
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 2.2e-20 102.1 85 67.1
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 5.9e-18 94.0 84 65.5
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 2.2e-17 92.0 84 64.3
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 6.5e-17 90.5 83 59.0
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 6.5e-17 90.5 83 62.7
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 1.9e-16 89.0 83 60.2
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 4.2e-16 87.8 84 64.3
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.5e-16 87.4 85 61.2
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.2e-15 86.3 84 58.3
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.1e-15 85.5 76 60.5
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 2.7e-15 85.1 84 57.1
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.7e-15 85.1 83 55.4
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 57.3
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.7e-15 85.1 75 57.3
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 3.6e-15 84.7 75 57.3
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.6e-15 84.7 75 57.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 4.7e-15 84.3 92 57.6
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 4.7e-15 84.3 84 58.3
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 4.7e-15 84.3 84 56.0
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 4.7e-15 84.3 76 57.9
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 8.0e-15 83.6 84 59.5
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 8.0e-15 83.6 73 61.6
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.0e-14 83.2 84 57.1
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.4e-14 82.8 76 57.9
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.4e-14 82.8 76 57.9
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.4e-14 82.8 84 60.7
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.8e-14 82.4 75 58.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-14 82.4 83 60.2
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 2.3e-14 82.0 84 54.8
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 2.3e-14 82.0 84 57.1
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 4.0e-14 81.3 75 58.7
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.0e-14 81.3 75 58.7
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 4.0e-14 81.3 75 58.7
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 4.0e-14 81.3 80 53.8
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 5.2e-14 80.9 84 54.8
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.2e-14 80.9 82 53.7
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 6.8e-14 80.5 83 60.2
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 6.8e-14 80.5 76 55.3
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 6.8e-14 80.5 85 54.1
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 8.8e-14 80.1 85 54.1
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.2e-13 79.7 82 52.4
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.2e-13 79.7 83 54.2
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.2e-13 79.7 83 54.2
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.5e-13 79.3 82 54.9
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.5e-13 79.3 84 56.0
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.5e-13 79.3 85 52.9
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 2.0e-13 79.0 83 50.6
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 2.0e-13 79.0 82 54.9
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 2.6e-13 78.6 81 54.3
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.6e-13 78.6 79 58.2
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 3.4e-13 78.2 82 58.5
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 3.4e-13 78.2 84 57.1
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 3.4e-13 78.2 77 53.2
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 3.4e-13 78.2 75 54.7
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 4.4e-13 77.8 81 56.8
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 4.4e-13 77.8 76 55.3
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 4.4e-13 77.8 79 53.2
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 5.7e-13 77.4 84 53.6
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.7e-13 77.4 83 56.6
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 7.5e-13 77.0 84 53.6
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 7.5e-13 77.0 73 52.1
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 9.8e-13 76.6 83 56.6
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 9.8e-13 76.6 83 56.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.7e-12 75.9 83 56.6
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.7e-12 75.9 75 54.7
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.7e-12 75.9 83 55.4
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 2.2e-12 75.5 84 58.3
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.2e-12 75.5 73 53.4
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.8e-12 75.1 77 51.9
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.8e-12 74.3 76 52.6
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 4.8e-12 74.3 73 54.8
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.1e-11 73.2 82 50.0
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 1.4e-11 72.8 87 51.7
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.8e-11 72.4 76 57.9
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 2.4e-11 72.0 81 51.9
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 4.1e-11 71.2 75 54.7
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 9.1e-11 70.1 82 51.2
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.2e-10 69.7 78 50.0
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.7e-10 68.6 73 50.7
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 3.5e-10 68.2 72 52.8
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.5e-10 67.8 82 48.8
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 4.5e-10 67.8 74 50.0
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.0e-09 66.6 77 50.6
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.0e-09 66.6 72 50.0
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.7e-09 65.9 75 50.7
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 2.2e-09 65.5 77 44.2
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.2e-09 65.5 76 48.7
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 2.9e-09 65.1 82 43.9
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 5.0e-09 64.3 73 47.9
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.5e-08 62.8 75 48.0
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.5e-08 62.8 72 54.2
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.9e-08 62.4 76 47.4
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.9e-08 62.4 91 40.7
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.5e-08 60.8 78 48.7
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 5.5e-08 60.8 75 45.3
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 7.2e-08 60.5 75 45.3
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 7.2e-08 60.5 83 42.2
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 9.4e-08 60.1 78 48.7
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.6e-07 59.3 63 52.4
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 4.7e-07 57.8 75 44.0
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 4.0e-06 54.7 79 40.5


User provided reference genes

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