Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 7.2e-234 813.5 407 100.0
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 1.9e-202 709.1 354 100.0
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 6.3e-198 694.1 351 99.1
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 9.8e-191 670.2 351 95.2
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 8.3e-190 667.2 351 94.6
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 9.2e-181 637.1 353 91.8
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 3.3e-170 602.1 354 86.2
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 7.5e-167 590.9 356 84.3
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 4.9e-166 588.2 356 83.7
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 1.1e-165 587.0 354 84.2
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 3.5e-164 582.0 356 83.7
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 3.5e-164 582.0 356 83.7
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 4.6e-164 581.6 351 83.8
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 8.6e-163 577.4 354 82.5
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 8.1e-161 570.9 355 82.5
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 8.4e-158 560.8 354 79.9
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 4.6e-156 555.1 354 79.1
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 7.8e-156 554.3 355 78.9
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 1.7e-150 536.6 349 77.1
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 4.3e-130 468.8 345 68.4
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 1.5e-114 417.2 353 60.9
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 7.4e-114 414.8 359 59.1
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.8e-113 412.9 337 61.1
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 4.8e-113 412.1 348 60.9
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 2.4e-112 409.8 299 65.6
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 9.1e-112 407.9 287 65.9
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 1.2e-111 407.5 346 58.7
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.6e-111 406.4 346 60.1
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 7.7e-111 404.8 316 63.3
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.0e-110 404.4 313 62.0
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 1.7e-110 403.7 310 62.9
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 2.9e-110 402.9 346 60.1
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 2.9e-110 402.9 348 57.2
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 5.0e-110 402.1 347 57.9
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 8.5e-110 401.4 351 58.1
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 1.4e-109 400.6 318 61.9
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 2.5e-109 399.8 319 60.5
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 3.2e-109 399.4 355 58.6
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 4.2e-109 399.1 318 61.3
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 9.4e-109 397.9 312 63.8
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 1.2e-108 397.5 350 58.3
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 3.6e-108 396.0 337 58.2
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 1.4e-107 394.0 347 59.4
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.4e-107 394.0 312 60.6
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 3.0e-107 392.9 292 63.4
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 3.0e-107 392.9 349 57.0
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 5.1e-107 392.1 288 63.2
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 6.7e-107 391.7 279 65.2
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 8.8e-107 391.3 292 63.0
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 8.8e-107 391.3 313 60.4
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 1.5e-106 390.6 350 56.9
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 2.0e-106 390.2 310 61.0
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 2.6e-106 389.8 316 59.5
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 3.3e-106 389.4 327 59.3
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 4.4e-106 389.0 293 61.1
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 5.7e-106 388.7 327 57.8
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 1.7e-105 387.1 317 59.0
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 2.8e-105 386.3 318 58.2
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 6.3e-105 385.2 341 58.9
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 6.3e-105 385.2 299 60.9
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 8.2e-105 384.8 327 57.5
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 8.2e-105 384.8 288 62.5
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 8.2e-105 384.8 350 56.6
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.8e-104 383.6 349 55.9
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 2.4e-104 383.3 320 60.6
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 3.1e-104 382.9 338 58.0
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 5.3e-104 382.1 291 63.6
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 7.0e-104 381.7 306 62.1
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 7.0e-104 381.7 357 57.7
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 1.5e-103 380.6 319 59.9
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.5e-103 380.6 312 59.0
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 2.0e-103 380.2 355 56.3
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 2.6e-103 379.8 289 63.0
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 3.5e-103 379.4 285 63.9
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 5.0e-102 375.6 349 55.9
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 6.5e-102 375.2 310 61.3
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 6.5e-102 375.2 374 52.7
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 4.2e-101 372.5 308 60.1
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.1e-100 370.2 354 55.6
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 2.1e-100 370.2 349 55.3
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 5.2e-99 365.5 353 53.0
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 8.8e-99 364.8 328 57.0
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.1e-98 364.4 283 61.5
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 1.5e-98 364.0 357 53.5
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.0e-98 363.6 329 55.0
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 9.7e-98 361.3 287 60.6
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 5.3e-96 355.5 326 54.3
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 1.3e-94 350.9 320 55.6
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 1.5e-93 347.4 298 56.7
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 7.2e-93 345.1 293 57.7
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 4.7e-92 342.4 316 55.1
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.8e-91 340.5 344 51.5
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 2.3e-91 340.1 253 62.8
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 6.7e-91 338.6 285 57.9
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 8.8e-91 338.2 256 63.7
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.2e-90 337.8 229 69.4
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.3e-89 334.3 257 61.9
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.7e-89 334.0 244 63.1
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 2.2e-89 333.6 243 65.4
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 2.4e-88 330.1 293 58.0
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 3.6e-84 316.2 239 61.1
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 1.5e-82 310.8 283 56.2
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 1.7e-81 307.4 221 66.5
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.8e-80 303.9 225 63.1
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 1.6e-79 300.8 255 57.6
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 2.9e-78 296.6 222 61.7
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 6.6e-78 295.4 399 42.4
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.7e-70 270.8 325 48.3
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 1.1e-69 268.1 292 47.3
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 3.3e-69 266.5 197 62.4
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 7.5e-66 255.4 302 47.4
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.4e-64 251.1 315 42.9
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.6e-63 247.7 244 52.9
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 6.0e-63 245.7 286 43.4
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 9.5e-61 238.4 179 68.7
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.1e-59 235.0 266 47.4
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.4e-59 234.6 179 62.6
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 2.6e-58 230.3 307 44.6
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 7.8e-55 218.8 338 40.5
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 6.6e-54 215.7 325 43.1
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 2.5e-53 213.8 167 60.5
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 5.6e-53 212.6 160 59.4
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 1.2e-47 194.9 255 40.4
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 7.3e-45 185.7 242 43.4
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.7e-41 174.5 130 60.8
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.3e-38 164.9 503 28.6
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 7.3e-37 159.1 332 31.0
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 5.8e-34 149.4 155 54.2
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 7.6e-34 149.1 92 68.5
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.7e-33 147.9 166 52.4
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 6.0e-31 139.4 151 47.7
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 8.7e-30 135.6 109 59.6
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 8.7e-22 109.0 365 26.8
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 2.5e-16 90.9 216 29.6
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 1.5e-13 81.6 223 27.8
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 2.0e-10 71.2 246 25.6
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 1.7e-09 68.2 78 48.7


User provided reference genes

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