Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33545H Brassica oleracea HOM05D003604 ORTHO05D004110 1.6e-84 316.2 177 100.0
BolC5t33536H Brassica oleracea HOM05D003604 ORTHO05D004110 2.9e-83 312.0 177 97.2
A09p03180 Brassica napus HOM05D003604 ORTHO05D004110 5.8e-47 191.4 146 74.7
A01p34140 Brassica napus HOM05D003604 ORTHO05D004110 6.9e-40 167.9 104 93.3
BraA01t03518Z Brassica rapa HOM05D003604 ORTHO05D004110 6.9e-40 167.9 104 93.3
BcaC09g49007 Brassica carinata HOM05D003604 ORTHO05D004110 1.2e-39 167.2 104 82.7
BcaB04g20641 Brassica carinata HOM05D003604 ORTHO05D004110 1.5e-39 166.8 104 92.3
C01p43560 Brassica napus HOM05D003604 ORTHO05D004110 8.4e-38 161.0 104 80.8
BolC1t04317H Brassica oleracea HOM05D003604 ORTHO05D004110 8.4e-38 161.0 104 80.8
BcaC05g28298 Brassica carinata HOM05D003604 ORTHO05D004110 1.1e-37 160.6 104 81.7
BcaB06g26132 Brassica carinata HOM05D003604 ORTHO05D004110 1.4e-37 160.2 104 80.8
A05p28150 Brassica napus HOM05D003604 ORTHO05D004110 1.4e-37 160.2 104 80.8
BraA05t21698Z Brassica rapa HOM05D003604 ORTHO05D004110 1.4e-37 160.2 104 80.8
BraA07t29089Z Brassica rapa HOM05D003604 ORTHO05D004110 1.4e-37 160.2 129 71.3
C05p43600 Brassica napus HOM05D003604 ORTHO05D004110 3.2e-37 159.1 104 79.8
BolC5t33080H Brassica oleracea HOM05D003604 ORTHO05D004110 5.4e-37 158.3 104 79.8
CARHR096460 Cardamine hirsuta HOM05D003604 ORTHO05D004110 7.1e-37 157.9 104 78.8
Sp3g18690 Schrenkiella parvula HOM05D003604 ORTHO05D004110 2.1e-36 156.4 104 79.8
BolC2t09773H Brassica oleracea HOM05D003604 ORTHO05D004110 4.6e-36 155.2 90 90.0
Thhalv10020966m.g Eutrema salsugineum HOM05D003604 ORTHO05D004110 7.9e-36 154.5 104 80.8
Carub.0003s2063 Capsella rubella HOM05D003604 ORTHO05D004110 1.0e-35 154.1 104 79.8
AL3G34530 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 1.5e-34 150.2 104 77.9
AT3G20650 Arabidopsis thaliana HOM05D003604 ORTHO05D004110 1.5e-34 150.2 104 77.9
Aa31LG10G3370 Aethionema arabicum HOM05D003604 ORTHO05D004110 7.3e-34 147.9 104 74.0
THA.LOC104817889 Tarenaya hassleriana HOM05D003604 ORTHO05D004110 2.0e-31 139.8 106 68.9
TWI38G1923 Tripterygium wilfordii HOM05D003604 ORTHO05D004110 2.6e-31 139.4 105 66.7
MD11G1230000 Malus domestica HOM05D003604 ORTHO05D004110 5.8e-31 138.3 104 67.3
AL1G58850 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 7.6e-31 137.9 105 64.8
Glyma.08G209500 Glycine max HOM05D003604 ORTHO05D004110 1.7e-30 136.7 102 68.6
CsaV3_3G022660 Cucumis sativus L. HOM05D003604 ORTHO05D004110 2.9e-30 136.0 102 67.6
Gohir.A13G142800 Gossypium hirsutum HOM05D003604 ORTHO05D004110 2.9e-30 136.0 104 65.4
Gorai.013G165200 Gossypium raimondii HOM05D003604 ORTHO05D004110 2.9e-30 136.0 104 65.4
Ciclev10008689m.g Citrus clementina HOM05D003604 ORTHO05D004110 4.9e-30 135.2 102 66.7
Lalb_Chr03g0030231 Lupinus albus HOM05D003604 ORTHO05D004110 4.9e-30 135.2 105 65.7
Cpa.g.sc80.125 Carica papaya HOM05D003604 ORTHO05D004110 6.4e-30 134.8 104 64.4
Duzib213G0846 Durio zibethinus HOM05D003604 ORTHO05D004110 6.4e-30 134.8 104 64.4
Eucgr.F03392 Eucalyptus grandis HOM05D003604 ORTHO05D004110 6.4e-30 134.8 104 65.4
Phvul.011G146000 Phaseolus vulgaris HOM05D003604 ORTHO05D004110 8.4e-30 134.4 102 66.7
MELO3C018155.2 Cucumis melo HOM05D003604 ORTHO05D004110 1.1e-29 134.0 102 66.7
Manes.14G113200 Manihot esculenta HOM05D003604 ORTHO05D004110 1.1e-29 134.0 104 63.5
Sed0007679 Sechium edule HOM05D003604 ORTHO05D004110 1.1e-29 134.0 102 66.7
Ca_26239_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 1.4e-29 133.7 105 62.9
Ca_30045_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 1.4e-29 133.7 105 62.9
Lj1g0019007 Lotus japonicus HOM05D003604 ORTHO05D004110 1.9e-29 133.3 105 63.8
Thecc.07G059200 Theobroma cacao HOM05D003604 ORTHO05D004110 1.9e-29 133.3 104 64.4
Glyma.06G263000 Glycine max HOM05D003604 ORTHO05D004110 2.4e-29 132.9 102 66.7
Lalb_Chr01g0006251 Lupinus albus HOM05D003604 ORTHO05D004110 2.4e-29 132.9 105 63.8
Medtr7g110030 Medicago truncatula HOM05D003604 ORTHO05D004110 2.4e-29 132.9 104 63.5
Psat7g153240 Pisum sativum HOM05D003604 ORTHO05D004110 2.4e-29 132.9 103 64.1
HanXRQChr13g0407501 Helianthus annuus HOM05D003604 ORTHO05D004110 3.2e-29 132.5 104 64.4
Lj3g0004246 Lotus japonicus HOM05D003604 ORTHO05D004110 3.2e-29 132.5 104 62.5
ClCG05G014980 Citrullus lanatus HOM05D003604 ORTHO05D004110 4.2e-29 132.1 102 65.7
Duzib268G0095 Durio zibethinus HOM05D003604 ORTHO05D004110 4.2e-29 132.1 104 64.4
RcHm_v2.0_Chr5g0036961 Rosa chinensis HOM05D003604 ORTHO05D004110 4.2e-29 132.1 104 64.4
VMungo1127G0543 Vigna mungo HOM05D003604 ORTHO05D004110 4.2e-29 132.1 102 65.7
CARHR041070 Cardamine hirsuta HOM05D003604 ORTHO05D004110 5.4e-29 131.7 104 63.5
Medtr6g003920 Medicago truncatula HOM05D003604 ORTHO05D004110 7.1e-29 131.3 104 64.4
BcaC03g16005 Brassica carinata HOM05D003604 ORTHO05D004110 9.3e-29 131.0 68 94.1
TPR.G4607 Trifolium pratense HOM05D003604 ORTHO05D004110 9.3e-29 131.0 74 83.8
arahy.Tifrunner.gnm1.ann1.6T0369 Arachis hypogaea HOM05D003604 ORTHO05D004110 1.2e-28 130.6 74 85.1
arahy.Tifrunner.gnm1.ann1.B3WQY9 Arachis hypogaea HOM05D003604 ORTHO05D004110 1.2e-28 130.6 74 85.1
MD03G1215400 Malus domestica HOM05D003604 ORTHO05D004110 1.2e-28 130.6 104 65.4
CSS0036620 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 1.6e-28 130.2 102 65.7
CSS0043024 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 1.6e-28 130.2 102 65.7
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 2.1e-28 129.8 104 61.5
arahy.Tifrunner.gnm1.ann1.QJA41V Arachis hypogaea HOM05D003604 ORTHO05D004110 2.1e-28 129.8 104 61.5
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 2.1e-28 129.8 93 76.3
Cfa020470 Carpinus fangiana HOM05D003604 ORTHO05D004110 2.1e-28 129.8 104 62.5
RcHm_v2.0_Chr1g0332461 Rosa chinensis HOM05D003604 ORTHO05D004110 2.1e-28 129.8 154 50.6
FvH4_3g21511 Fragaria vesca HOM05D003604 ORTHO05D004110 2.7e-28 129.4 104 61.5
FAN11G1546 Fragaria x ananassa HOM05D000073 ORTHO05D004110 2.7e-28 129.4 104 61.5
CiPaw.12G124800 Carya illinoinensis HOM05D003604 ORTHO05D004110 3.5e-28 129.0 74 82.4
QL08p014504 Quercus lobata HOM05D003604 ORTHO05D004110 3.5e-28 129.0 102 62.7
Sed0017338 Sechium edule HOM05D003604 ORTHO05D004110 3.5e-28 129.0 102 64.7
PGR031G2944 Punica granatum HOM05D003604 ORTHO05D004110 4.6e-28 128.6 74 82.4
Migut.H01877 Erythranthe guttata HOM05D003604 ORTHO05D004110 6.0e-28 128.3 107 63.6
FAN16G3577 Fragaria x ananassa HOM05D003604 ORTHO05D004110 6.0e-28 128.3 104 61.5
Lsat_1_v5_gn_9_94841 Lactuca sativa HOM05D003604 ORTHO05D004110 6.0e-28 128.3 74 82.4
Hund23359 Selenicereus undatus HOM05D003604 ORTHO05D004110 6.0e-28 128.3 102 61.8
TAR624G0573 Trochodendron aralioides HOM05D003604 ORTHO05D004110 6.0e-28 128.3 103 63.1
COL.COLO4_09536 Corchorus olitorius HOM05D003604 ORTHO05D004110 7.9e-28 127.9 74 83.8
Gohir.A01G072200 Gossypium hirsutum HOM05D003604 ORTHO05D004110 7.9e-28 127.9 104 61.5
FvH4_6g24821 Fragaria vesca HOM05D003604 ORTHO05D004110 1.0e-27 127.5 104 61.5
PSO832G4297 Papaver somniferum HOM05D003604 ORTHO05D004110 1.0e-27 127.5 104 62.5
ECA240G0441 Erigeron canadensis HOM05D003604 ORTHO05D004110 1.3e-27 127.1 74 81.1
FAN25G2942 Fragaria x ananassa HOM05D000073 ORTHO05D004110 1.3e-27 127.1 74 79.7
vmacro01905 Vaccinium macrocarpon HOM05D003604 ORTHO05D004110 1.3e-27 127.1 102 64.7
GSVIVG01014550001 Vitis vinifera HOM05D003604 ORTHO05D004110 1.3e-27 127.1 102 62.7
CDE05G1290 Ceratophyllum demersum HOM05D003604 ORTHO05D004110 2.3e-27 126.3 106 59.4
Gohir.D01G059000 Gossypium hirsutum HOM05D003604 ORTHO05D004110 2.3e-27 126.3 104 60.6
Gorai.002G080000 Gossypium raimondii HOM05D003604 ORTHO05D004110 2.3e-27 126.3 104 60.6
PSO210G6085 Papaver somniferum HOM05D003604 ORTHO05D004110 2.3e-27 126.3 105 61.0
Haze_09573 Corylus avellana HOM05D003604 ORTHO05D004110 3.0e-27 125.9 104 59.6
Atru.chr2.3114 Acer truncatum HOM05D003604 ORTHO05D004110 3.9e-27 125.6 74 82.4
Atru.chr2.3131 Acer truncatum HOM05D003604 ORTHO05D004110 3.9e-27 125.6 74 82.4
BcaC05g28687 Brassica carinata HOM05D003604 ORTHO05D004110 3.9e-27 125.6 62 98.4
CANSAT11G1782 Cannabis sativa HOM05D003604 ORTHO05D004110 3.9e-27 125.6 74 81.1
Aqoxy1G03843 Aquilegia oxysepala HOM05D003604 ORTHO05D004110 5.1e-27 125.2 103 61.2
arahy.Tifrunner.gnm1.ann1.R4IE40 Arachis hypogaea HOM05D003604 ORTHO05D004110 5.1e-27 125.2 72 81.9
Cc05_g12990 Coffea canephora HOM05D003604 ORTHO05D004110 6.7e-27 124.8 102 61.8
Oeu005439.1 Olea europaea HOM05D003604 ORTHO05D004110 6.7e-27 124.8 104 64.4
BolC4t23530H Brassica oleracea HOM05D003604 ORTHO05D004110 1.1e-26 124.0 82 91.5
CAN.G5.14 Capsicum annuum HOM05D003604 ORTHO05D004110 1.1e-26 124.0 74 81.1
SGA_v2.0_scaffold9G05001 Striga asiatica HOM05D003604 ORTHO05D004110 1.1e-26 124.0 105 61.0
Actinidia00329 Actinidia chinensis HOM05D003604 ORTHO05D004110 1.5e-26 123.6 105 59.0
Hma1.2p1_0456F.1_g156560 Hydrangea macrophylla HOM05D003604 ORTHO05D004110 1.5e-26 123.6 74 83.8
Nitab4.5_0000335g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 1.5e-26 123.6 74 81.1
Nitab4.5_0000511g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 1.5e-26 123.6 74 81.1
Solyc09g005300.3 Solanum lycopersicum HOM05D003604 ORTHO05D004110 1.5e-26 123.6 74 79.7
Sopen09g001270 Solanum pennellii HOM05D003604 ORTHO05D004110 1.5e-26 123.6 74 79.7
Nn2g10854 Nelumbo nucifera HOM05D003604 ORTHO05D004110 1.9e-26 123.2 105 59.0
CSS0042481 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 2.5e-26 122.9 105 58.1
MBI18_g38395_MAGBIO Magnolia biondii HOM05D003604 ORTHO05D004110 3.3e-26 122.5 104 60.6
Lj8C164T0 Lonicera japonica HOM05D003604 ORTHO05D004110 5.6e-26 121.7 74 79.7
Potri.011G130100 Populus trichocarpa HOM05D003604 ORTHO05D004110 7.4e-26 121.3 105 59.0
SalBow7G1717 Salvia bowleyana HOM05D003604 ORTHO05D004110 7.4e-26 121.3 105 61.0
CAN.G843.15 Capsicum annuum HOM05D003604 ORTHO05D004110 9.6e-26 120.9 74 79.7
DCAR_010007 Daucus carota HOM05D003604 ORTHO05D004110 1.3e-25 120.6 74 77.0
Solyc03g118250.4 Solanum lycopersicum HOM05D003604 ORTHO05D004110 1.3e-25 120.6 74 78.4
Peaxi162Scf00141g00107 Petunia axillaris HOM05D003604 ORTHO05D004110 3.7e-25 119.0 74 75.7
Sopen03g037160 Solanum pennellii HOM05D003604 ORTHO05D004110 6.2e-25 118.2 74 75.7
Os08g0180000 Oryza sativa ssp. japonica HOM05D003604 ORTHO05D004110 8.1e-25 117.9 74 77.0
Sc03g0009420 Simmondsia chinensis HOM05D003604 ORTHO05D004110 1.4e-24 117.1 72 77.8
Zm00001eb054690 Zea mays HOM05D003604 ORTHO05D004110 1.4e-24 117.1 74 75.7
PSO675G0229 Papaver somniferum HOM05D003604 ORTHO05D004110 1.8e-24 116.7 105 59.0
HPP92_020594 Vanilla planifolia HOM05D003604 ORTHO05D004110 6.9e-24 114.8 104 56.7
EL10Ac4g08013 Beta vulgaris HOM05D003604 ORTHO05D004110 1.2e-23 114.0 104 58.7
PSO541G3797 Papaver somniferum HOM05D003604 ORTHO05D004110 1.2e-23 114.0 105 58.1
Oeu060531.1 Olea europaea HOM05D003604 ORTHO05D004110 2.6e-23 112.8 104 61.5
AUR62041148 Chenopodium quinoa HOM05D003604 ORTHO05D004110 3.4e-23 112.5 104 56.7
AUR62029554 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.0e-22 110.9 102 55.9
ATR0721G088 Amborella trichopoda HOM05D003604 ORTHO05D004110 1.7e-22 110.2 102 53.9
Manes.06G031600 Manihot esculenta HOM05D003604 ORTHO05D004110 2.2e-22 109.8 65 76.9
SHI31882 Sapria himalayana HOM05D003604 ORTHO05D004110 2.9e-22 109.4 128 51.6
Sabra11G0117500 Salix brachista HOM05D003604 ORTHO05D004110 6.5e-22 108.2 72 73.6
DCAR_022503 Daucus carota HOM05D003604 ORTHO05D004110 1.9e-21 106.7 74 68.9
AUR62029271 Chenopodium quinoa HOM05D003604 ORTHO05D004110 9.3e-21 104.4 72 72.2
FAN24G2186 Fragaria x ananassa HOM05D003604 ORTHO05D004110 4.6e-20 102.1 77 64.9
FvH4_2g07560 Fragaria vesca HOM05D003604 ORTHO05D004110 6.0e-20 101.7 76 65.8
FvH4_2g07570 Fragaria vesca HOM05D003604 ORTHO05D004110 6.0e-20 101.7 76 65.8
FvH4_2g07650 Fragaria vesca HOM05D003604 ORTHO05D004110 6.0e-20 101.7 76 65.8
FAN15G1062 Fragaria x ananassa HOM05D003604 ORTHO05D004110 6.0e-20 101.7 76 65.8
FAN22G2085 Fragaria x ananassa HOM05D003604 ORTHO05D004110 6.0e-20 101.7 76 65.8
FAN15G2058 Fragaria x ananassa HOM05D003604 ORTHO05D004110 7.9e-20 101.3 76 64.5
AUR62034817 Chenopodium quinoa HOM05D003604 ORTHO05D004110 3.0e-19 99.4 121 45.5
FAN24G0344 Fragaria x ananassa HOM05D003604 ORTHO05D004110 5.1e-19 98.6 76 63.2
FAN24G1060 Fragaria x ananassa HOM05D003604 ORTHO05D004110 6.7e-19 98.2 76 64.5
FvH4_2g07500 Fragaria vesca HOM05D003604 ORTHO05D004110 2.5e-18 96.3 76 63.2
FvH4_1g24830 Fragaria vesca HOM05D003604 ORTHO05D004110 5.7e-18 95.1 74 64.9
FAN19G0122 Fragaria x ananassa HOM05D003604 ORTHO05D004110 9.6e-18 94.4 74 63.5
BolC2t09772H Brassica oleracea HOM05D003604 ORTHO05D004110 1.3e-17 94.0 50 94.0
FAN19G2257 Fragaria x ananassa HOM05D003604 ORTHO05D004110 8.2e-17 91.3 74 62.2
Mapoly0053s0007 Marchantia polymorpha HOM05D003604 ORTHO05D004110 5.3e-16 88.6 74 59.5
BcaC03g16006 Brassica carinata HOM05D003604 ORTHO05D004110 4.5e-15 85.5 44 90.9
BolC4t23531H Brassica oleracea HOM05D003604 ORTHO05D004110 1.3e-14 84.0 44 93.2
Lj6A334T24 Lonicera japonica HOM05D003604 ORTHO05D004110 8.4e-14 81.3 46 82.6
SMO266G0094 Selaginella moellendorffii HOM05D003604 ORTHO05D004110 8.4e-14 81.3 74 55.4
PGSC0003DMG401014244 Solanum tuberosum HOM05D003604 ORTHO05D004110 8.4e-14 81.3 46 82.6
Pp3c23_20110 Physcomitrium patens HOM05D003604 ORTHO05D004110 7.2e-13 78.2 76 52.6
CBR_g12774 Chara braunii HOM05D003604 ORTHO05D004110 2.3e-11 73.2 68 51.5
FAN23G2626 Fragaria x ananassa HOM05D003604 ORTHO05D004110 4.3e-10 68.9 57 59.6
FvH4_1g24790 Fragaria vesca HOM05D003604 ORTHO05D004110 1.6e-09 67.0 48 64.6
Medtr3g014120 Medicago truncatula HOM05D003604 ORTHO05D004110 7.7e-07 58.2 52 59.6
FAN26G1617 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.9e-06 56.2 34 73.5
FvH4_2g07580 Fragaria vesca HOM05D003604 ORTHO05D004110 8.5e-06 54.7 33 72.7


User provided reference genes

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