Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 3.6e-192 674.9 367 100.0
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 2.5e-177 625.5 342 100.0
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 2.5e-177 625.5 342 100.0
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 1.0e-175 620.2 367 93.2
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 1.4e-175 619.8 367 93.5
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 1.9e-161 572.8 343 92.7
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 2.6e-158 562.4 343 86.6
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 8.3e-157 557.4 343 85.7
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 1.9e-156 556.2 343 85.4
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 2.7e-155 552.4 343 84.3
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 3.9e-154 548.5 338 85.5
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 4.3e-153 545.0 346 83.2
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 4.3e-153 545.0 337 85.5
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 9.5e-153 543.9 346 82.9
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 1.2e-152 543.5 337 85.2
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 8.1e-152 540.8 346 81.8
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 2.7e-147 525.8 343 80.2
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 2.0e-142 509.6 343 77.8
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 9.6e-121 437.6 340 69.7
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 6.3e-112 408.3 268 83.6
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 3.0e-106 389.4 343 60.9
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 5.7e-105 385.2 340 58.8
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 2.4e-103 379.8 344 59.0
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 5.1e-98 362.1 342 57.9
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 1.5e-97 360.5 331 58.6
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 7.4e-97 358.2 342 57.3
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 4.8e-96 355.5 337 57.6
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 3.1e-95 352.8 337 55.8
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 3.1e-95 352.8 336 55.4
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 4.1e-95 352.4 339 54.3
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 5.3e-95 352.1 339 53.4
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 2.6e-94 349.7 343 53.1
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.0e-93 347.8 360 53.9
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 1.7e-93 347.1 340 55.3
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 2.2e-93 346.7 337 56.4
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 2.2e-93 346.7 340 52.4
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 6.5e-93 345.1 325 56.3
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 8.5e-93 344.7 339 54.6
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 8.5e-93 344.7 341 55.7
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 3.2e-92 342.8 331 55.6
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 9.4e-92 341.3 342 56.1
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 4.7e-91 339.0 330 58.5
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 4.7e-91 339.0 349 52.7
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 7.9e-91 338.2 364 51.6
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 5.2e-90 335.5 341 55.4
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 6.7e-90 335.1 321 52.0
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 8.8e-90 334.7 335 53.7
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 2.6e-89 333.2 329 53.5
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 1.7e-88 330.5 321 58.3
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 4.8e-88 328.9 321 57.9
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 6.3e-88 328.6 329 54.4
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 8.2e-88 328.2 330 54.2
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 8.2e-88 328.2 335 50.7
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 8.2e-88 328.2 321 57.9
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 8.2e-88 328.2 329 54.1
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 5.3e-87 325.5 340 52.6
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 7.0e-87 325.1 340 53.2
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 2.6e-86 323.2 343 52.2
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 2.6e-86 323.2 332 52.4
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 2.6e-86 323.2 331 52.3
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 3.5e-86 322.8 331 52.0
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 1.0e-85 321.2 334 53.3
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 3.8e-85 319.3 333 50.2
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 3.8e-85 319.3 331 52.3
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 5.0e-85 318.9 352 48.6
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 6.5e-85 318.5 343 53.6
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 8.5e-85 318.2 331 52.0
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 1.5e-84 317.4 346 51.7
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 1.5e-84 317.4 327 52.6
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.9e-84 317.0 361 49.0
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 5.5e-84 315.5 331 52.3
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 5.5e-84 315.5 323 51.7
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 8.0e-83 311.6 352 49.7
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 4.0e-82 309.3 314 52.9
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 8.8e-82 308.1 334 50.9
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 8.8e-82 308.1 335 49.3
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 1.5e-81 307.4 336 49.7
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.5e-81 307.4 366 45.9
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 9.7e-81 304.7 316 51.6
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 1.3e-80 304.3 321 53.3
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 1.3e-80 304.3 352 48.0
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 1.6e-78 297.4 320 51.2
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 2.0e-78 297.0 337 45.7
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 2.9e-77 293.1 337 47.2
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 3.8e-77 292.7 356 45.8
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 6.5e-77 292.0 303 52.8
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 1.1e-76 291.2 329 48.3
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 5.5e-76 288.9 337 48.4
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 9.4e-76 288.1 331 48.3
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 1.6e-75 287.3 333 48.3
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 1.0e-74 284.6 339 46.0
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 5.2e-74 282.3 337 49.6
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 1.2e-73 281.2 337 49.6
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 2.8e-72 276.6 337 45.7
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 2.8e-72 276.6 343 47.5
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 3.7e-72 276.2 331 46.2
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 1.7e-69 267.3 265 52.8
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 2.3e-69 266.9 333 46.5
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 1.6e-67 260.8 330 47.0
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 2.8e-64 250.0 401 40.9
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 8.3e-64 248.4 332 43.4
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 1.6e-62 244.2 280 51.1
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.6e-62 244.2 278 53.2
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 1.0e-61 241.5 266 55.6
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 7.3e-60 235.3 343 45.8
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 4.7e-59 232.6 222 55.9
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 5.7e-57 225.7 293 45.7
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 8.3e-56 221.9 332 41.3
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 1.4e-55 221.1 259 52.9
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 1.2e-54 218.0 163 60.7
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 2.3e-50 203.8 164 56.7
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 5.2e-50 202.6 267 44.6
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 9.8e-49 198.4 158 59.5
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 4.6e-46 189.5 327 38.2
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 7.8e-46 188.7 213 49.3
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 3.1e-42 176.8 163 52.8
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 8.9e-42 175.3 310 34.8
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 4.4e-41 172.9 311 35.7
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 9.9e-41 171.8 296 38.5
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 1.3e-40 171.4 161 50.3
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 1.2e-38 164.9 307 35.5
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 4.3e-36 156.4 153 50.3
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 3.6e-35 153.3 156 51.9
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 4.7e-35 152.9 320 35.3
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 8.9e-34 148.7 291 38.1
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 4.1e-31 139.8 151 47.0
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 4.1e-31 139.8 145 51.0
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 6.2e-27 125.9 151 41.7
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 1.1e-23 115.2 161 43.5
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 1.9e-23 114.4 82 63.4
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 3.5e-22 110.2 108 57.4
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.5e-20 104.8 72 61.1
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 1.2e-17 95.1 75 58.7
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 2.2e-16 90.9 85 76.5
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 7.1e-15 85.9 238 29.4
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 2.3e-13 80.9 82 42.7
ATR0618G212 Amborella trichopoda HOM05D005588 ORTHO05D006615 2.4e-07 60.8 74 47.3


User provided reference genes

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