Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 6.3e-73 277.3 139 100.0
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 6.3e-73 277.3 139 100.0
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 6.3e-73 277.3 139 100.0
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 8.2e-73 276.9 139 99.3
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 5.3e-72 274.2 139 98.6
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 5.5e-69 264.2 139 93.5
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 4.7e-68 261.2 139 92.1
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 3.0e-67 258.5 140 92.1
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 5.2e-67 257.7 139 89.9
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 2.0e-66 255.8 139 87.8
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 2.6e-66 255.4 140 90.0
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 4.8e-65 251.1 141 90.8
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 2.2e-62 242.3 140 87.9
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 5.0e-62 241.1 140 85.7
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 5.0e-62 241.1 140 85.7
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 4.7e-60 234.6 140 82.1
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 1.0e-59 233.4 140 85.7
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 1.0e-54 216.9 134 79.1
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 3.4e-50 201.8 132 75.0
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 8.3e-49 197.2 128 71.9
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 9.2e-48 193.7 145 68.3
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 2.7e-47 192.2 132 71.2
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 3.5e-47 191.8 134 69.4
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 1.3e-46 189.9 134 69.4
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 1.3e-46 189.9 126 70.6
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 2.3e-46 189.1 126 73.0
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 5.0e-46 188.0 130 69.2
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 1.1e-45 186.8 134 66.4
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 1.1e-45 186.8 131 68.7
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 1.5e-45 186.4 125 74.4
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 4.3e-45 184.9 126 70.6
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 5.6e-45 184.5 131 67.9
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 7.3e-45 184.1 126 71.4
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 1.2e-44 183.3 125 69.6
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 2.1e-44 182.6 126 69.8
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 2.1e-44 182.6 130 68.5
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 2.1e-44 182.6 130 68.5
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 2.1e-44 182.6 130 68.5
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.8e-44 182.2 130 66.2
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 2.8e-44 182.2 132 68.2
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 8.0e-44 180.6 126 69.0
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 1.0e-43 180.3 131 67.2
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 2.3e-43 179.1 126 69.0
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 2.3e-43 179.1 133 64.7
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 2.3e-43 179.1 130 66.9
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 4.0e-43 178.3 102 79.4
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 5.2e-43 177.9 132 61.4
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 6.8e-43 177.6 130 65.4
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 6.8e-43 177.6 126 65.1
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.2e-42 176.8 134 64.9
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 4.4e-42 174.9 134 63.4
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 4.4e-42 174.9 102 78.4
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 4.4e-42 174.9 108 75.9
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 5.8e-42 174.5 102 76.5
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 7.5e-42 174.1 102 75.5
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 7.5e-42 174.1 102 75.5
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 9.8e-42 173.7 130 64.6
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 9.8e-42 173.7 127 65.4
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 1.3e-41 173.3 133 64.7
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 1.3e-41 173.3 126 68.3
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.3e-41 173.3 108 71.3
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 1.7e-41 172.9 115 74.8
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.7e-41 172.9 126 65.9
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.2e-41 172.6 133 63.9
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 2.2e-41 172.6 131 67.9
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 2.2e-41 172.6 132 66.7
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 2.2e-41 172.6 129 66.7
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 2.2e-41 172.6 110 74.5
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 2.2e-41 172.6 131 63.4
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 2.2e-41 172.6 130 62.3
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 2.9e-41 172.2 102 76.5
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 3.7e-41 171.8 131 64.9
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 3.7e-41 171.8 115 73.0
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 3.7e-41 171.8 100 77.0
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 4.9e-41 171.4 131 61.8
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.9e-41 171.4 126 65.1
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 8.3e-41 170.6 102 75.5
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 8.3e-41 170.6 134 63.4
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 8.3e-41 170.6 125 65.6
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 8.3e-41 170.6 102 76.5
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 8.3e-41 170.6 132 67.4
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 1.4e-40 169.9 102 74.5
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 3.2e-40 168.7 120 65.0
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 4.1e-40 168.3 103 74.8
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 4.1e-40 168.3 132 64.4
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 4.1e-40 168.3 102 74.5
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 5.4e-40 167.9 113 69.0
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.6e-39 166.4 125 61.6
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 1.6e-39 166.4 98 78.6
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 2.0e-39 166.0 102 73.5
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 2.0e-39 166.0 102 75.5
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 2.0e-39 166.0 125 64.8
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 2.7e-39 165.6 108 70.4
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 3.5e-39 165.2 127 64.6
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 3.5e-39 165.2 108 69.4
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 6.0e-39 164.5 131 63.4
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 6.0e-39 164.5 108 70.4
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 7.8e-39 164.1 102 69.6
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.0e-38 163.7 126 61.9
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 5.0e-38 161.4 126 65.1
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 6.6e-38 161.0 108 68.5
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 1.9e-37 159.5 108 68.5
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 5.6e-37 157.9 102 70.6
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.1e-36 156.0 181 47.5
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 8.9e-35 150.6 134 55.2
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 3.4e-34 148.7 138 55.1
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 7.5e-34 147.5 85 80.0
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 1.3e-33 146.7 172 49.4
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 1.7e-33 146.4 83 80.7
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 3.7e-33 145.2 84 77.4
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 3.2e-32 142.1 111 64.0
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 5.4e-32 141.4 134 54.5
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 9.2e-32 140.6 137 51.8
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 2.3e-30 136.0 104 63.5
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 6.6e-30 134.4 134 53.7
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.7e-28 128.3 85 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 6.8e-27 124.4 100 55.0
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 2.0e-26 122.9 97 51.5
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 6.4e-25 117.9 100 52.0
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 6.0e-23 111.3 97 50.5
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 3.9e-22 108.6 61 78.7
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 8.1e-20 100.9 98 48.0
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 1.8e-19 99.8 61 70.5
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 6.8e-19 97.8 61 68.9
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 4.9e-17 91.7 61 65.6
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 1.6e-15 86.7 85 47.1
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 3.9e-14 82.0 64 59.4
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 1.9e-13 79.7 91 49.5
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 1.9e-13 79.7 49 73.5
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 7.3e-13 77.8 66 57.6
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 2.1e-12 76.3 67 56.7
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 3.6e-12 75.5 57 57.9
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 6.2e-12 74.7 72 55.6
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.6e-10 69.3 54 53.7
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 7.6e-10 67.8 34 88.2
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 2.9e-09 65.9 101 29.7
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 1.6e-07 60.1 96 31.2
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 2.1e-07 59.7 36 69.4


User provided reference genes

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