Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28563 Brassica carinata HOM05D012125 ORTHO05D001295 5.9e-52 207.2 102 100.0
C05p46600 Brassica napus HOM05D012125 ORTHO05D001295 5.9e-52 207.2 102 100.0
BolC5t33388H Brassica oleracea HOM05D012125 ORTHO05D001295 5.9e-52 207.2 102 100.0
BraA05t21913Z Brassica rapa HOM05D012125 ORTHO05D001295 2.9e-51 204.9 102 98.0
A05p30720 Brassica napus HOM05D012125 ORTHO05D001295 6.5e-51 203.8 102 97.1
Sp3g16940 Schrenkiella parvula HOM05D012125 ORTHO05D001295 1.3e-46 189.5 102 90.2
BcaB04g20741 Brassica carinata HOM05D012125 ORTHO05D001295 4.8e-46 187.6 102 88.2
Thhalv10021820m.g Eutrema salsugineum HOM05D012125 ORTHO05D001295 6.3e-46 187.2 102 89.2
BcaC01g03671 Brassica carinata HOM05D012125 ORTHO05D001295 3.5e-44 181.4 102 86.3
BolC3t17276H Brassica oleracea HOM05D012125 ORTHO05D001295 3.5e-44 181.4 102 86.3
C03p49810 Brassica napus HOM05D012125 ORTHO05D001295 1.7e-43 179.1 102 85.3
BcaB06g25938 Brassica carinata HOM05D012125 ORTHO05D001295 1.1e-42 176.4 104 86.5
Carub.0003s1868 Capsella rubella HOM05D012125 ORTHO05D001295 1.1e-37 159.8 103 75.7
CARHR094290 Cardamine hirsuta HOM05D012125 ORTHO05D001295 1.2e-36 156.4 106 73.6
BcaNung06097 Brassica carinata HOM05D012125 ORTHO05D001295 3.6e-33 144.8 102 73.5
Aa31LG8G5680 Aethionema arabicum HOM05D001848 ORTHO05D001295 5.7e-31 137.5 103 69.9
AT5G48485 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 3.5e-12 75.1 99 44.4
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 3.9e-11 71.6 108 41.7
AL8G21340 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 6.6e-11 70.9 100 43.0
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 8.6e-11 70.5 108 38.0
Carub.0008s0807 Capsella rubella HOM05D001848 ORTHO05D001295 1.5e-10 69.7 96 43.8
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 1.9e-10 69.3 105 40.0
Aqoxy2G03960 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 3.3e-10 68.6 104 41.3
Rhsim05G0076600 Rhododendron simsii HOM05D001848 ORTHO05D001295 3.3e-10 68.6 100 46.0
Manes.15G148400 Manihot esculenta HOM05D001848 ORTHO05D001295 4.3e-10 68.2 94 44.7
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 5.6e-10 67.8 95 40.0
Sc08g0000310 Simmondsia chinensis HOM05D001848 ORTHO05D001295 9.5e-10 67.0 99 41.4
MSTRG.22559 Avicennia marina HOM05D001848 ORTHO05D001295 1.6e-09 66.2 106 39.6
Lj1g0024594 Lotus japonicus HOM05D001848 ORTHO05D001295 2.8e-09 65.5 92 41.3
Potri.T125404 Populus trichocarpa HOM05D001848 ORTHO05D001295 2.8e-09 65.5 109 43.1
BcaB07g30026 Brassica carinata HOM05D001848 ORTHO05D001295 3.6e-09 65.1 82 42.7
Eucgr.I01246 Eucalyptus grandis HOM05D001848 ORTHO05D001295 6.2e-09 64.3 102 41.2
FvH4_2g17830 Fragaria vesca HOM05D001848 ORTHO05D001295 6.2e-09 64.3 103 47.6
FAN15G3178 Fragaria x ananassa HOM05D001848 ORTHO05D001295 6.2e-09 64.3 103 47.6
FAN24G1271 Fragaria x ananassa HOM05D001848 ORTHO05D001295 6.2e-09 64.3 103 47.6
QL11p042360 Quercus lobata HOM05D001848 ORTHO05D001295 6.2e-09 64.3 104 39.4
Potri.009G112553 Populus trichocarpa HOM05D001848 ORTHO05D001295 8.0e-09 63.9 109 42.2
RcHm_v2.0_Chr6g0282861 Rosa chinensis HOM05D001848 ORTHO05D001295 8.0e-09 63.9 98 48.0
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 1.1e-08 63.5 90 38.9
Nn1g07985 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.1e-08 63.5 104 40.4
Nn1g08247 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.1e-08 63.5 104 40.4
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 1.4e-08 63.2 94 38.3
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 1.4e-08 63.2 101 38.6
DCAR_021418 Daucus carota HOM05D001848 ORTHO05D001295 1.4e-08 63.2 97 41.2
PSO017G5175 Papaver somniferum HOM05D001848 ORTHO05D001295 1.4e-08 63.2 95 37.9
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 1.4e-08 63.2 101 41.6
Sp2g18860 Schrenkiella parvula HOM05D001848 ORTHO05D001295 1.4e-08 63.2 101 41.6
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.4e-08 63.2 108 38.0
Atru.chr5.2942 Acer truncatum HOM05D001848 ORTHO05D001295 1.8e-08 62.8 99 40.4
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 1.8e-08 62.8 95 38.9
CiPaw.14G043500 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.8e-08 62.8 102 39.2
MBI07_g13964_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 1.8e-08 62.8 98 40.8
Prupe.8G103000 Prunus persica HOM05D001848 ORTHO05D001295 2.3e-08 62.4 96 41.7
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 2.3e-08 62.4 94 38.3
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 3.1e-08 62.0 101 37.6
DCAR_021416 Daucus carota HOM05D001848 ORTHO05D001295 3.1e-08 62.0 98 40.8
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 3.1e-08 62.0 108 38.0
Nn7g37661 Nelumbo nucifera HOM05D001848 ORTHO05D001295 4.0e-08 61.6 102 37.3
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 5.2e-08 61.2 105 39.0
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 5.2e-08 61.2 102 41.2
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 6.8e-08 60.8 76 43.4
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 6.8e-08 60.8 95 37.9
DCAR_018625 Daucus carota HOM05D001848 ORTHO05D001295 6.8e-08 60.8 92 38.0
Lj3g0013447 Lotus japonicus HOM05D001848 ORTHO05D001295 6.8e-08 60.8 98 39.8
Sc17g0001760 Simmondsia chinensis HOM05D001848 ORTHO05D001295 6.8e-08 60.8 106 38.7
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 6.8e-08 60.8 103 36.9
VMungo1383G1556 Vigna mungo HOM05D001848 ORTHO05D001295 6.8e-08 60.8 94 40.4
AT5G48490 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 8.9e-08 60.5 101 39.6
CAN.G129.19 Capsicum annuum HOM05D001848 ORTHO05D001295 8.9e-08 60.5 91 44.0
Ca_20849_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 8.9e-08 60.5 100 37.0
DCAR_029929 Daucus carota HOM05D001848 ORTHO05D001295 8.9e-08 60.5 94 39.4
Lsat_1_v5_gn_5_118320 Lactuca sativa HOM05D001848 ORTHO05D001295 8.9e-08 60.5 106 39.6
Nn1g08244 Nelumbo nucifera HOM05D001848 ORTHO05D001295 8.9e-08 60.5 104 40.4
QL09p046203 Quercus lobata HOM05D001848 ORTHO05D001295 8.9e-08 60.5 97 38.1
TWI36G0223 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 8.9e-08 60.5 100 41.0
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 1.2e-07 60.1 97 37.1
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 1.2e-07 60.1 97 41.2
Glyma.08G344300 Glycine max HOM05D001848 ORTHO05D001295 1.2e-07 60.1 92 39.1
MBI07_g42482_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 1.2e-07 60.1 91 40.7
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.2e-07 60.1 91 40.7
Phvul.008G137100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.2e-07 60.1 92 40.2
Sed0004601 Sechium edule HOM05D001848 ORTHO05D001295 1.2e-07 60.1 92 40.2
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 2.0e-07 59.3 95 36.8
ClCG07G016680 Citrullus lanatus HOM05D001848 ORTHO05D001295 2.0e-07 59.3 96 38.5
Ciclev10022967m.g Citrus clementina HOM05D001848 ORTHO05D001295 2.0e-07 59.3 72 48.6
MELO3C012724.2 Cucumis melo HOM05D001848 ORTHO05D001295 2.0e-07 59.3 102 33.3
Lalb_Chr01g0002711 Lupinus albus HOM05D001848 ORTHO05D001295 2.0e-07 59.3 96 35.4
Rhsim01G0248600 Rhododendron simsii HOM05D001848 ORTHO05D001295 2.0e-07 59.3 96 39.6
Solyc01g066910.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 2.0e-07 59.3 98 39.8
AL8G21350 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 2.6e-07 58.9 96 36.5
Hma1.2p1_0161F.1_g071380 Hydrangea macrophylla HOM05D001848 ORTHO05D001295 2.6e-07 58.9 80 42.5
Manes.11G113800 Manihot esculenta HOM05D001848 ORTHO05D001295 2.6e-07 58.9 96 42.7
Sabra02G0190900 Salix brachista HOM05D001848 ORTHO05D001295 2.6e-07 58.9 95 42.1
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 3.4e-07 58.5 100 39.0
Lsat_1_v5_gn_9_16260 Lactuca sativa HOM05D001848 ORTHO05D001295 3.4e-07 58.5 96 37.5
MD10G1081500 Malus domestica HOM05D001848 ORTHO05D001295 3.4e-07 58.5 108 41.7
Medtr4g069220 Medicago truncatula HOM05D001848 ORTHO05D001295 4.4e-07 58.2 99 36.4
CANSAT11G0405 Cannabis sativa HOM05D001848 ORTHO05D001295 5.8e-07 57.8 96 36.5
CiPaw.05G061200 Carya illinoinensis HOM05D001848 ORTHO05D001295 5.8e-07 57.8 109 37.6
Ca_07467_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 7.5e-07 57.4 92 38.0
FvH4_4g11910 Fragaria vesca HOM05D001848 ORTHO05D001295 7.5e-07 57.4 102 39.2
FAN12G2359 Fragaria x ananassa HOM05D001848 ORTHO05D001295 7.5e-07 57.4 102 39.2
FAN17G1858 Fragaria x ananassa HOM05D001848 ORTHO05D001295 7.5e-07 57.4 102 37.3
Psat0s3819g0040 Pisum sativum HOM05D001848 ORTHO05D001295 7.5e-07 57.4 98 34.7
Sopen01g028530 Solanum pennellii HOM05D001848 ORTHO05D001295 7.5e-07 57.4 91 40.7
Actinidia00500 Actinidia chinensis HOM05D001848 ORTHO05D001295 9.8e-07 57.0 99 37.4
CsaV3_7G026880 Cucumis sativus L. HOM05D001848 ORTHO05D001295 9.8e-07 57.0 79 41.8
Os07g0290200 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 9.8e-07 57.0 95 38.9
Psat7g184840 Pisum sativum HOM05D001848 ORTHO05D001295 9.8e-07 57.0 88 36.4
Sc17g0001780 Simmondsia chinensis HOM05D001848 ORTHO05D001295 9.8e-07 57.0 104 36.5
FAN07G0789 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.3e-06 56.6 93 38.7
FAN22G1308 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.3e-06 56.6 93 38.7
Sabra14G0113300 Salix brachista HOM05D001848 ORTHO05D001295 1.3e-06 56.6 97 38.1
TPR.G26815 Trifolium pratense HOM05D001848 ORTHO05D001295 1.3e-06 56.6 102 36.3
Lalb_Chr03g0041101 Lupinus albus HOM05D001848 ORTHO05D001295 1.7e-06 56.2 91 34.1
MD05G1070500 Malus domestica HOM05D001848 ORTHO05D001295 1.7e-06 56.2 98 43.9
Nitab4.5_0005076g0020 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.7e-06 56.2 93 38.7
Potri.002G251000 Populus trichocarpa HOM05D001848 ORTHO05D001295 1.7e-06 56.2 94 40.4
PGR083G0807 Punica granatum HOM05D001848 ORTHO05D001295 1.7e-06 56.2 99 39.4
Cpa.g.sc8.74 Carica papaya HOM05D001848 ORTHO05D001295 2.2e-06 55.8 93 39.8
Migut.D00731 Erythranthe guttata HOM05D001848 ORTHO05D001295 2.2e-06 55.8 77 39.0
Glyma.12G045500 Glycine max HOM05D001848 ORTHO05D001295 2.2e-06 55.8 93 33.3
QL10p044006 Quercus lobata HOM05D001848 ORTHO05D001295 2.2e-06 55.8 101 36.6
PGSC0003DMG400011323 Solanum tuberosum HOM05D001848 ORTHO05D001295 2.2e-06 55.8 91 39.6
arahy.Tifrunner.gnm1.ann1.E6CSJF Arachis hypogaea HOM05D001848 ORTHO05D001295 2.9e-06 55.5 100 36.0
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 2.9e-06 55.5 104 36.5
Eucgr.H00727 Eucalyptus grandis HOM05D001848 ORTHO05D001295 2.9e-06 55.5 72 43.1
Medtr7g052640 Medicago truncatula HOM05D001848 ORTHO05D001295 2.9e-06 55.5 92 35.9
Sc17g0001770 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.9e-06 55.5 97 35.1
TPR.G28533 Trifolium pratense HOM05D001848 ORTHO05D001295 2.9e-06 55.5 102 33.3
HanXRQChr10g0307341 Helianthus annuus HOM05D001848 ORTHO05D001295 3.7e-06 55.1 101 39.6
Phvul.011G047400 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 3.7e-06 55.1 90 33.3
Os07g0287400 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 4.9e-06 54.7 75 42.7
VMungo1127G0744 Vigna mungo HOM05D001848 ORTHO05D001295 4.9e-06 54.7 89 36.0
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 6.4e-06 54.3 99 35.4
arahy.Tifrunner.gnm1.ann1.PJ92NG Arachis hypogaea HOM05D001848 ORTHO05D001295 8.3e-06 53.9 100 36.0
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 8.3e-06 53.9 100 36.0
ClCG09G008160 Citrullus lanatus HOM05D001848 ORTHO05D001295 8.3e-06 53.9 95 36.8
Peaxi162Scf00038g01729 Petunia axillaris HOM05D001848 ORTHO05D001295 8.3e-06 53.9 89 38.2
HPP92_009932 Vanilla planifolia HOM05D001848 ORTHO05D001295 8.3e-06 53.9 98 39.8


User provided reference genes

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