Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 2.0e-106 389.0 185 100.0
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 2.9e-105 385.2 185 98.9
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 3.6e-100 368.2 186 95.7
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 3.6e-100 368.2 186 95.7
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 1.2e-92 343.2 183 89.6
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.8e-91 339.3 188 87.8
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 3.1e-91 338.6 188 87.8
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 5.2e-91 337.8 188 87.8
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 2.6e-90 335.5 188 86.7
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 3.4e-90 335.1 188 87.2
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 2.8e-84 315.5 188 83.5
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 2.3e-54 216.1 198 57.6
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 1.9e-53 213.0 196 57.1
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 6.3e-52 208.0 205 55.1
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 6.3e-52 208.0 198 58.1
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.4e-51 206.8 171 61.4
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 3.1e-51 205.7 175 60.0
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 9.0e-51 204.1 176 60.2
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 4.5e-50 201.8 179 59.8
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 1.0e-49 200.7 123 82.1
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 1.3e-49 200.3 194 55.7
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 2.2e-49 199.5 187 54.5
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 3.8e-49 198.7 173 57.2
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 8.5e-49 197.6 176 58.0
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 8.5e-49 197.6 154 63.0
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 1.1e-48 197.2 186 54.8
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 1.1e-48 197.2 190 56.3
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.4e-48 196.8 184 57.1
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.5e-48 196.1 170 59.4
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 3.2e-48 195.7 199 51.8
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 3.2e-48 195.7 165 59.4
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 4.2e-48 195.3 220 49.5
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 4.2e-48 195.3 163 59.5
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 7.2e-48 194.5 176 57.4
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 9.3e-48 194.1 161 59.0
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 1.2e-47 193.7 190 52.6
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 1.6e-47 193.4 163 56.4
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 1.6e-47 193.4 181 59.1
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.6e-47 193.4 173 60.1
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 1.6e-47 193.4 187 57.2
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.1e-47 193.0 194 55.2
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 2.1e-47 193.0 174 58.0
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 2.7e-47 192.6 167 58.1
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 2.7e-47 192.6 124 70.2
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 2.7e-47 192.6 124 70.2
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.1e-47 191.4 194 55.2
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 6.1e-47 191.4 194 55.2
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.0e-46 190.7 162 59.9
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 6.7e-46 188.0 189 51.9
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 1.1e-45 187.2 194 50.0
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 1.6e-44 183.3 183 57.4
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 4.1e-43 178.7 170 57.1
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 4.1e-43 178.7 182 53.8
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 6.9e-43 177.9 176 53.4
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 9.1e-43 177.6 174 53.4
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 1.5e-42 176.8 192 52.6
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 3.4e-42 175.6 109 70.6
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 5.9e-42 174.9 157 58.6
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 5.9e-42 174.9 189 51.3
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 2.2e-41 172.9 179 53.1
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 6.5e-41 171.4 188 50.0
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 6.5e-41 171.4 169 51.5
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 6.5e-41 171.4 97 77.3
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.4e-40 170.2 164 56.1
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 1.4e-40 170.2 192 50.5
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 1.9e-40 169.9 192 50.5
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 2.5e-40 169.5 107 72.9
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 3.2e-40 169.1 179 52.5
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 4.2e-40 168.7 106 71.7
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 5.5e-40 168.3 160 52.5
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 5.5e-40 168.3 192 50.0
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 5.5e-40 168.3 165 56.4
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 7.2e-40 167.9 181 50.8
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 7.2e-40 167.9 170 53.5
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 9.4e-40 167.5 106 72.6
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 2.7e-39 166.0 181 49.7
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 2.7e-39 166.0 188 48.4
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 1.8e-38 163.3 143 58.7
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.8e-38 163.3 125 62.4
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 5.1e-38 161.8 189 46.0
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 8.8e-38 161.0 103 68.9
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 4.4e-37 158.7 104 70.2
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 4.4e-37 158.7 127 60.6
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 5.7e-37 158.3 111 66.7
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.7e-37 157.5 173 50.3
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 9.7e-37 157.5 156 53.2
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 9.7e-37 157.5 168 47.6
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.7e-36 156.8 166 53.0
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 8.2e-36 154.5 165 50.3
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 8.2e-36 154.5 143 53.1
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 1.8e-35 153.3 160 50.0
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 5.3e-35 151.8 126 57.9
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 2.2e-33 146.4 138 54.3
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 2.2e-33 146.4 87 72.4
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 3.8e-33 145.6 75 85.3
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 4.7e-31 138.7 176 43.2
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 6.1e-31 138.3 127 52.0
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.9e-31 137.9 138 50.7
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.3e-28 130.6 137 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 1.4e-27 127.1 159 42.1
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 3.1e-27 125.9 158 44.9
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 4.1e-27 125.6 139 48.9
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 5.3e-27 125.2 108 54.6
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.2e-25 119.8 97 55.7
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.1e-24 117.5 186 39.8
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.9e-24 116.7 95 53.7
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 2.8e-20 102.8 119 48.7
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 2.7e-18 96.3 128 44.5
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 4.5e-18 95.5 200 37.5
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 2.2e-17 93.2 67 64.2
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 8.5e-17 91.3 135 44.4
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 7.2e-16 88.2 69 65.2
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 7.5e-13 78.2 122 40.2
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 4.1e-11 72.4 107 38.3
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 3.0e-06 56.2 62 37.1


User provided reference genes

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