Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 0.0e+00 1093.6 583 100.0
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 0.0e+00 1090.9 583 99.7
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.6e-311 1072.0 583 98.1
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 2.8e-311 1071.2 583 98.1
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 6.7e-310 1066.6 587 98.3
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.5e-296 1022.3 583 91.9
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 4.2e-296 1020.8 583 91.8
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.5e-293 1012.3 584 91.8
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 2.0e-293 1011.9 584 92.1
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 2.8e-292 1008.1 583 91.6
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.1e-291 1006.1 583 91.4
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.4e-291 1005.0 583 91.4
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.6e-290 1002.3 584 90.1
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-289 999.6 584 91.4
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.0e-289 999.6 584 91.1
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.7e-289 998.8 583 91.1
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 2.9e-289 998.0 583 90.4
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 2.9e-273 944.9 594 85.7
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 2.0e-266 922.2 586 84.1
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 2.8e-255 885.2 586 81.1
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.1e-254 881.7 585 79.7
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 4.1e-251 871.3 584 80.3
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 5.4e-251 870.9 592 79.1
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.3e-249 865.5 583 78.4
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 8.6e-249 863.6 583 77.9
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 3.3e-248 861.7 587 78.2
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 1.2e-247 859.8 536 83.8
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.8e-247 858.6 583 77.7
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 2.4e-246 855.5 602 77.1
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.2e-246 854.4 583 77.5
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 6.8e-246 854.0 586 78.2
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 4.4e-245 851.3 581 78.0
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 7.6e-245 850.5 581 77.8
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 7.6e-245 850.5 581 77.8
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 9.9e-245 850.1 583 77.4
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.3e-244 849.7 589 77.8
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.3e-244 849.7 589 77.2
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.2e-244 849.0 589 77.2
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 2.9e-244 848.6 545 82.0
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 3.8e-244 848.2 585 77.6
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 4.9e-244 847.8 585 77.8
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 6.4e-244 847.4 587 76.3
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.1e-243 846.7 584 77.4
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.9e-243 845.9 551 80.9
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.9e-243 845.9 563 80.5
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.4e-243 845.5 585 77.1
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.4e-243 845.5 585 76.6
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.4e-243 844.3 583 78.0
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 5.4e-243 844.3 585 76.8
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.2e-242 843.2 583 79.1
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.1e-242 842.4 583 77.9
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 3.5e-242 841.6 586 76.1
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 6.0e-242 840.9 531 82.3
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 5.1e-241 837.8 535 81.9
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 5.1e-241 837.8 531 82.1
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 8.7e-241 837.0 531 82.1
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.1e-240 836.6 595 74.8
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.9e-240 835.9 493 86.8
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.5e-240 835.5 583 77.0
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.3e-240 834.7 583 77.0
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 9.6e-240 833.6 534 81.6
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.3e-239 833.2 551 80.2
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.6e-239 832.8 583 76.5
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 2.8e-239 832.0 534 80.9
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 4.8e-239 831.2 538 81.4
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.1e-238 830.1 543 81.2
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 4.0e-238 828.2 623 72.6
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 5.3e-238 827.8 526 82.7
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 9.0e-238 827.0 588 75.2
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.2e-237 826.6 560 78.4
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.5e-237 826.2 579 76.9
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.6e-237 825.5 571 77.4
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 4.4e-237 824.7 565 78.2
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.3e-236 823.2 605 74.2
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.3e-236 823.2 491 85.3
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.2e-236 822.4 611 73.0
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 2.9e-236 822.0 589 74.7
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.4e-235 819.7 547 79.5
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.9e-235 819.3 570 76.0
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 4.2e-235 818.1 583 75.1
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.7e-234 815.5 528 80.1
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 6.0e-234 814.3 531 80.8
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 2.3e-233 812.4 529 81.3
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.0e-233 812.0 543 78.6
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 3.9e-233 811.6 583 78.4
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 5.1e-233 811.2 517 82.2
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 8.7e-233 810.4 566 75.3
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.1e-232 810.1 591 74.1
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.9e-232 809.3 585 75.4
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.9e-232 809.3 584 73.8
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 3.3e-232 808.5 561 76.6
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 8.1e-231 803.9 591 73.1
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 8.1e-231 803.9 566 76.1
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.2e-229 800.0 617 71.5
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.2e-227 792.0 528 79.2
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.2e-226 790.0 508 82.9
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 5.1e-225 784.6 528 79.2
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.9e-224 782.7 506 80.6
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 2.2e-220 769.2 574 72.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-216 756.9 466 83.5
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 3.3e-216 755.4 498 80.3
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.6e-215 753.1 464 82.1
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 5.8e-213 744.6 435 88.0
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.2e-210 736.9 743 59.1
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.6e-210 734.9 574 67.2
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 3.9e-209 731.9 496 78.0
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 3.3e-208 728.8 581 70.1
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.8e-207 724.9 437 85.1
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.2e-204 716.1 574 69.3
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 3.8e-204 715.3 437 83.8
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 7.2e-203 711.1 527 70.6
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 7.2e-203 711.1 435 85.7
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.2e-202 710.3 567 66.7
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.2e-196 689.5 570 65.1
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 6.1e-194 681.4 554 66.1
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 8.2e-191 671.0 396 88.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.8e-185 653.3 439 77.2
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 2.3e-185 652.9 397 83.9
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.5e-184 650.2 406 81.5
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.3e-183 647.1 389 85.6
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.5e-181 638.6 427 78.7
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.3e-180 637.1 422 77.0
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.9e-179 633.3 418 79.2
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 2.3e-177 626.3 419 77.6
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.2e-177 625.2 420 77.4
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.0e-172 610.9 455 73.6
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 6.8e-169 598.2 316 100.0
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.5e-163 579.7 468 69.2
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.7e-148 530.4 585 55.7
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.2e-146 524.2 443 67.0
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 4.7e-146 522.3 389 74.3
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 8.9e-137 491.5 452 64.4
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.0e-136 490.3 352 71.9
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.6e-133 479.2 299 82.6
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.1e-125 453.8 269 85.5
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 7.3e-123 445.3 261 87.0
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 9.6e-123 444.9 334 73.7
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 2.9e-119 433.3 522 46.9
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 2.4e-118 430.3 285 77.5
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.7e-82 311.2 484 44.4
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.1e-78 298.5 213 70.9
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 4.7e-77 293.1 575 38.4
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.1e-73 282.0 186 75.8
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.7e-69 267.3 303 53.5
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.3e-66 258.5 197 71.1
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 1.3e-55 221.9 140 80.0
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.7e-53 213.4 167 65.9
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 3.0e-52 210.7 193 57.0
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 9.2e-49 199.1 118 86.4
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 4.3e-46 190.3 126 77.8
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.2e-34 151.4 145 58.6
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.7e-34 150.6 186 52.7
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.6e-32 145.2 101 82.2
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 6.0e-32 143.3 109 74.3
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.0e-31 140.2 94 71.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.3e-26 125.6 78 83.3
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.9e-25 121.7 69 88.4
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 2.3e-23 114.8 104 57.7
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.1e-22 112.5 79 73.4
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 5.6e-22 110.2 71 73.2
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 4.7e-21 107.1 70 75.7
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.6e-19 101.3 61 82.0
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 8.6e-15 86.3 53 83.0
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 3.6e-13 80.9 149 37.6
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 3.6e-13 80.9 58 72.4
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 7.1e-09 66.6 90 48.9
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.0e-07 62.8 48 60.4
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.0e-07 62.8 39 82.1
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 2.5e-06 58.2 56 51.8


User provided reference genes

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