Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33211H Brassica oleracea HOM05D003579 ORTHO05D004266 9.8e-110 400.2 212 100.0
BraA05t21823Z Brassica rapa HOM05D003579 ORTHO05D004266 2.3e-98 362.5 212 92.9
BraA05t21815Z Brassica rapa HOM05D003579 ORTHO05D004266 2.5e-97 359.0 216 91.2
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 1.4e-68 263.5 138 100.0
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 6.5e-61 238.0 160 81.2
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 6.5e-61 238.0 160 81.2
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.1e-60 237.3 160 80.6
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 1.9e-60 236.5 160 80.6
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 1.9e-60 236.5 160 80.6
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 4.2e-60 235.3 160 79.4
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.2e-59 233.8 160 80.0
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 5.1e-58 228.4 161 77.6
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 8.7e-58 227.6 269 53.9
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 4.3e-57 225.3 159 76.7
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 5.7e-57 224.9 160 75.6
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 7.4e-57 224.6 160 75.0
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 1.6e-56 223.4 160 74.4
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 2.8e-56 222.6 242 55.8
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.4e-55 220.3 160 73.1
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 1.8e-55 219.9 187 69.5
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 3.1e-55 219.2 162 72.2
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 5.3e-55 218.4 160 73.1
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 5.3e-55 218.4 160 73.1
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 2.2e-53 213.0 160 70.6
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 5.0e-53 211.8 165 70.3
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 1.1e-49 200.7 163 66.9
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 1.5e-49 200.3 160 66.9
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 2.0e-49 199.9 158 67.7
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.0e-49 199.9 161 66.5
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 2.5e-49 199.5 160 67.5
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 4.3e-49 198.7 162 64.8
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 5.7e-49 198.4 160 66.2
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 5.7e-49 198.4 163 65.0
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 7.4e-49 198.0 163 65.0
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 7.4e-49 198.0 161 65.8
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 7.4e-49 198.0 163 64.4
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 9.7e-49 197.6 168 63.1
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 1.3e-48 197.2 163 64.4
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 1.7e-48 196.8 160 68.1
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 2.2e-48 196.4 168 63.1
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 2.2e-48 196.4 160 65.0
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 2.2e-48 196.4 162 66.0
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 3.7e-48 195.7 163 63.2
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 3.7e-48 195.7 160 64.4
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 3.7e-48 195.7 160 67.5
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 4.8e-48 195.3 160 66.9
Gohir.D07G065501 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.8e-48 195.3 162 64.8
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 4.8e-48 195.3 162 66.0
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 6.3e-48 194.9 163 64.4
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 6.3e-48 194.9 163 63.8
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 6.3e-48 194.9 160 66.9
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 6.3e-48 194.9 158 67.7
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 8.2e-48 194.5 162 64.2
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 8.2e-48 194.5 163 63.8
QL10p037085 Quercus lobata HOM05D003579 ORTHO05D004266 8.2e-48 194.5 163 64.4
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.1e-47 194.1 162 64.2
Hund22317 Selenicereus undatus HOM05D003579 ORTHO05D004266 1.4e-47 193.7 158 63.9
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 1.8e-47 193.4 160 66.9
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 2.4e-47 193.0 160 65.6
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 3.1e-47 192.6 158 65.8
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 3.1e-47 192.6 163 65.0
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 4.1e-47 192.2 160 63.1
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.1e-47 192.2 160 65.6
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 5.3e-47 191.8 160 65.6
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 5.3e-47 191.8 163 63.2
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 6.9e-47 191.4 163 63.8
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 6.9e-47 191.4 163 63.2
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 9.1e-47 191.0 242 51.7
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 1.2e-46 190.7 165 63.0
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 1.5e-46 190.3 160 65.6
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.5e-46 190.3 160 65.0
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 1.5e-46 190.3 163 62.0
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.0e-46 189.9 163 62.0
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 2.0e-46 189.9 160 66.2
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 2.0e-46 189.9 158 65.2
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 2.0e-46 189.9 160 63.1
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 2.6e-46 189.5 160 64.4
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 3.4e-46 189.1 163 63.2
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 3.4e-46 189.1 163 62.0
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 3.4e-46 189.1 160 63.1
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 3.4e-46 189.1 160 63.1
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.4e-46 189.1 164 64.0
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.4e-46 189.1 164 64.0
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 4.5e-46 188.7 158 63.3
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 7.7e-46 188.0 162 59.3
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 1.0e-45 187.6 161 63.4
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.3e-45 187.2 162 62.3
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 1.7e-45 186.8 163 62.0
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 1.7e-45 186.8 163 62.0
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.7e-45 186.8 161 62.1
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 2.9e-45 186.0 158 63.9
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 6.5e-45 184.9 163 61.3
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 1.1e-44 184.1 160 65.6
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.1e-44 184.1 160 63.1
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 1.9e-44 183.3 158 60.1
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 1.9e-44 183.3 160 62.5
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 2.5e-44 183.0 160 63.1
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 2.5e-44 183.0 158 62.7
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 3.2e-44 182.6 182 58.2
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 9.4e-44 181.0 165 58.8
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 1.2e-43 180.6 183 57.4
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 1.6e-43 180.3 270 45.2
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 2.1e-43 179.9 159 59.1
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 2.1e-43 179.9 183 56.8
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 2.1e-43 179.9 159 62.3
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 2.7e-43 179.5 165 58.2
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 4.7e-43 178.7 160 60.6
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 7.9e-43 177.9 158 63.9
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 3.0e-42 176.0 188 55.9
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 3.9e-42 175.6 161 58.4
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 3.9e-42 175.6 179 55.3
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 5.1e-42 175.3 147 64.6
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 8.8e-42 174.5 163 58.3
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 1.5e-41 173.7 163 58.9
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 2.0e-41 173.3 159 60.4
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 5.7e-41 171.8 170 56.5
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 9.7e-41 171.0 167 56.9
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 6.3e-40 168.3 193 51.3
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 1.4e-39 167.2 193 49.2
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 7.0e-39 164.9 129 69.0
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 7.0e-39 164.9 157 55.4
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.3e-37 160.6 162 56.2
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.3e-37 160.6 159 54.7
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.7e-37 160.2 157 56.1
Lalb_Chr14g0370481 Lupinus albus HOM05D003579 ORTHO05D004266 9.4e-36 154.5 163 55.2
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 2.1e-35 153.3 159 54.7
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 2.1e-35 153.3 191 47.6
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 3.6e-35 152.5 163 53.4
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 5.2e-34 148.7 222 43.7
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 2.5e-28 129.8 160 48.1
SEGI_32565 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 5.5e-28 128.6 163 46.6
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 1.4e-26 124.0 123 57.7
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 1.8e-26 123.6 128 53.9
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 2.3e-26 123.2 156 45.5
Oeu016195.1 Olea europaea HOM05D003579 ORTHO05D004266 1.5e-25 120.6 117 58.1
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 2.8e-24 116.3 91 61.5
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 6.3e-24 115.2 163 47.2
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 8.3e-24 114.8 94 61.7
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 1.2e-22 110.9 86 66.3
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 2.0e-22 110.2 165 41.2
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 1.0e-18 97.8 163 39.9
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 2.8e-16 89.7 148 43.2
Sopen09g023790 Solanum pennellii HOM05D003579 ORTHO05D004266 1.4e-10 70.9 77 50.6
Sopen11g021990 Solanum pennellii HOM05D003579 ORTHO05D004266 1.4e-10 70.9 77 50.6


User provided reference genes

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