Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 0.0e+00 1158.3 562 100.0
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 0.0e+00 1156.4 562 99.8
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1156.4 562 99.8
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1156.4 562 99.8
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 0.0e+00 1155.2 562 99.6
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 0.0e+00 1139.8 562 98.0
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 0.0e+00 1134.4 562 97.7
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 0.0e+00 1131.3 562 97.3
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1123.2 562 96.4
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1122.1 562 96.4
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 0.0e+00 1122.1 562 96.4
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 0.0e+00 1121.3 562 96.3
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 0.0e+00 1111.3 562 95.4
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 0.0e+00 1110.9 562 95.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 0.0e+00 1107.8 562 94.0
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 0.0e+00 1099.0 562 94.0
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 0.0e+00 1093.2 562 92.9
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.5e-306 1054.7 562 89.5
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-305 1052.4 562 88.8
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.2e-305 1051.6 562 88.6
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 562 88.6
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 562 88.1
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 7.0e-296 1020.0 562 85.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 561 86.3
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 563 85.4
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 4.7e-292 1007.3 565 85.0
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 564 86.0
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 3.0e-291 1004.6 564 85.5
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 3.0e-291 1004.6 564 85.6
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 8.8e-291 1003.0 564 85.1
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.5e-290 1002.3 564 84.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.5e-290 1002.3 565 84.4
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 564 85.6
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.3e-290 1001.1 563 85.1
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.7e-289 997.7 565 84.6
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.3e-289 996.9 565 84.8
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.1e-288 996.1 565 84.2
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 4.1e-288 994.2 564 84.2
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 5.3e-288 993.8 565 84.6
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 7.0e-288 993.4 563 84.9
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 9.1e-288 993.0 564 84.6
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.2e-287 992.6 564 84.0
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 1.6e-287 992.3 563 84.9
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.0e-287 991.9 565 84.4
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.5e-287 991.1 564 83.9
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.3e-286 989.2 562 84.2
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.7e-286 988.8 564 84.0
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.2e-286 988.4 564 84.6
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 6.5e-286 986.9 562 84.3
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.1e-285 986.1 564 83.3
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.5e-285 985.7 564 83.2
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.5e-285 985.7 564 83.7
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.9e-285 985.3 565 84.2
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 2.5e-285 984.9 561 83.4
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 3.2e-285 984.6 565 83.5
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 3.2e-285 984.6 565 83.5
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 4.2e-285 984.2 564 83.0
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 7.2e-285 983.4 564 83.5
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 7.2e-285 983.4 565 83.4
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.2e-284 982.6 564 83.9
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.1e-284 981.9 564 82.4
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.1e-284 981.9 564 82.4
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 83.0
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 6.1e-284 980.3 564 83.2
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 6.1e-284 980.3 564 83.3
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 8.0e-284 979.9 564 83.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 1.4e-283 979.2 564 84.2
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 6.8e-283 976.9 567 83.4
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 8.8e-283 976.5 564 82.6
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 83.3
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 2.6e-282 974.9 521 88.3
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 4.4e-282 974.2 564 82.3
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.7e-282 973.8 564 82.8
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 9.7e-282 973.0 564 81.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 82.8
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 81.4
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.2e-281 971.8 564 82.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 3.7e-281 971.1 562 82.4
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 3.7e-281 971.1 564 83.0
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 4.8e-281 970.7 563 82.4
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 6.3e-281 970.3 563 82.2
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 8.3e-281 969.9 559 82.1
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 5.3e-280 967.2 564 82.4
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 7.0e-280 966.8 562 82.0
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.6e-279 965.7 561 81.3
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.5e-279 964.5 564 81.9
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.9e-279 963.8 564 81.0
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.2e-278 961.8 556 82.2
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.0e-278 960.7 562 81.1
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.5e-278 959.9 563 81.5
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.1e-277 959.5 551 83.3
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.5e-277 959.1 551 82.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.2e-277 958.0 559 81.8
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 5.5e-277 957.2 564 81.7
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 7.2e-277 956.8 564 81.2
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 6.1e-276 953.7 564 80.7
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.1e-276 953.7 550 82.5
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.0e-275 953.0 564 80.0
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.3e-275 951.8 564 80.5
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 2.3e-275 951.8 563 80.5
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.0e-275 951.4 551 81.3
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.2e-275 950.7 550 82.2
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.2e-274 949.5 564 79.4
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.2e-274 949.5 563 79.9
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 9.8e-274 946.4 553 80.8
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.3e-273 946.0 564 80.3
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.7e-273 945.7 564 80.1
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 3.7e-273 944.5 564 79.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.6e-271 939.1 564 78.4
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.0e-271 938.7 568 79.4
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 3.5e-271 937.9 561 80.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.0e-270 934.1 566 79.7
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 7.2e-269 930.2 566 79.3
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.2e-268 929.5 534 81.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.6e-268 929.1 566 79.2
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.0e-267 924.5 564 77.8
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 2.6e-266 921.8 566 79.2
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.3e-265 919.5 564 78.0
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.9e-261 905.6 552 77.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 4.3e-261 904.4 564 75.4
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.6e-261 904.0 564 75.5
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.6e-261 904.0 559 76.2
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.1e-260 902.1 564 75.0
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 2.8e-260 901.7 554 76.5
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.8e-260 901.7 554 76.2
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 7.5e-258 893.6 564 75.9
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.7e-257 891.3 564 77.8
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.2e-255 886.3 553 76.1
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.7e-255 885.2 564 73.4
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 5.2e-251 870.9 570 72.1
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 4.9e-249 864.4 564 73.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 5.4e-248 860.9 563 72.5
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 3.5e-247 858.2 561 72.5
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.9e-245 852.4 564 72.7
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 6.0e-239 830.9 565 71.2
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.9e-237 825.9 565 71.0
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.6e-236 822.8 564 71.3
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 4.7e-236 821.2 558 74.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 4.9e-225 784.6 468 77.8
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.7e-215 752.3 419 86.6
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.8e-204 714.9 425 80.0
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.5e-200 702.6 562 64.4
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.9e-193 679.1 561 61.9
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.4e-181 637.9 373 79.6
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.4e-171 607.1 553 53.9
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.1e-159 565.1 418 69.1
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 8.0e-159 564.7 519 50.3
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.4e-158 563.9 330 80.0
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.0e-158 562.8 486 53.5
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 1.2e-154 550.8 298 84.2
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.3e-137 494.2 418 56.2
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 4.1e-131 472.6 316 71.5
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.5e-128 464.2 561 47.6
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.8e-127 459.9 561 47.4
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.6e-125 451.8 466 54.9
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-98 364.0 546 41.9
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.5e-93 347.8 214 80.4
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 3.2e-83 313.5 489 36.8
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 1.5e-72 278.1 198 69.2
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-71 275.0 198 68.7
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 8.2e-71 272.3 166 78.9
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-50 204.5 166 68.7
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-50 202.6 166 68.7
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.4e-49 201.8 166 68.7
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-48 198.4 166 68.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.2e-47 194.5 117 81.2
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.7e-45 186.0 128 73.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.5e-44 182.6 128 71.9
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 2.6e-40 171.0 116 66.4
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.2e-37 162.2 375 31.2
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 8.6e-36 156.0 210 46.2
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.0e-33 147.1 492 25.4
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 7.0e-30 136.3 181 48.6
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.5e-27 128.6 87 67.8
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.3e-27 127.5 89 67.4
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 4.7e-26 123.6 76 71.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 7.5e-24 116.3 67 74.6
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.7e-23 115.2 166 45.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.3e-20 105.5 103 51.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 2.2e-15 88.2 46 82.6
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 6.8e-09 66.6 32 96.9
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 6.8e-09 66.6 32 96.9
C03p50670 Brassica napus HOM05D003778 ORTHO05D004418 2.6e-08 64.7 32 93.8
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 6.4e-07 60.1 140 26.4
Atru.chr7.1606 Acer truncatum HOM05D000597 ORTHO05D000603 1.4e-06 58.9 141 30.5
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 1.4e-06 58.9 164 26.2


User provided reference genes

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