Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33085H Brassica oleracea HOM05D002065 ORTHO05D002050 3.9e-88 328.2 173 100.0
BcaB04g20643 Brassica carinata HOM05D002065 ORTHO05D002050 5.8e-52 208.0 138 76.8
BcaB04g19117 Brassica carinata HOM05D002065 ORTHO05D002050 1.1e-50 203.8 138 75.4
C01p43600 Brassica napus HOM05D002065 ORTHO05D002050 1.1e-50 203.8 138 74.6
BolC1t04321H Brassica oleracea HOM05D002065 ORTHO05D002050 1.1e-50 203.8 138 74.6
BcaC09g49003 Brassica carinata HOM05D002065 ORTHO05D002050 1.4e-50 203.4 138 74.6
A01p34210 Brassica napus HOM05D002065 ORTHO05D002050 2.5e-50 202.6 138 73.9
BraA01t03521Z Brassica rapa HOM05D002065 ORTHO05D002050 2.5e-50 202.6 138 73.9
Sp3g18610 Schrenkiella parvula HOM05D002065 ORTHO05D002050 3.9e-48 195.3 139 73.4
BraA03t13337Z Brassica rapa HOM05D002065 ORTHO05D002050 8.7e-48 194.1 139 74.1
BcaC01g03546 Brassica carinata HOM05D002065 ORTHO05D002050 1.1e-47 193.7 139 74.1
C03p51220 Brassica napus HOM05D002065 ORTHO05D002050 1.1e-47 193.7 139 74.1
BolC3t17412H Brassica oleracea HOM05D002065 ORTHO05D002050 1.1e-47 193.7 139 74.1
A03p41840 Brassica napus HOM05D002065 ORTHO05D002050 4.3e-47 191.8 139 73.4
CARHR096380 Cardamine hirsuta HOM05D002065 ORTHO05D002050 6.9e-45 184.5 137 67.2
Thhalv10021500m.g Eutrema salsugineum HOM05D002065 ORTHO05D002050 9.0e-45 184.1 143 67.1
AT3G20600 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 1.2e-44 183.7 146 67.8
AL3G34460 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 3.4e-44 182.2 146 66.4
Sp3g18640 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.7e-43 179.9 143 67.8
Sp3g18650 Schrenkiella parvula HOM05D002065 ORTHO05D002050 5.0e-43 178.3 143 68.5
Carub.0003s2057 Capsella rubella HOM05D002065 ORTHO05D002050 2.3e-40 169.5 148 62.8
C05p43720 Brassica napus HOM05D002065 ORTHO05D002050 8.8e-40 167.5 99 90.9
BcaC05g28309 Brassica carinata HOM05D002065 ORTHO05D002050 5.7e-39 164.9 140 61.4
C05p43700 Brassica napus HOM05D002065 ORTHO05D002050 5.7e-39 164.9 140 61.4
BraA05t21707Z Brassica rapa HOM05D002065 ORTHO05D002050 5.7e-39 164.9 140 60.7
BcaB06g26126 Brassica carinata HOM05D002065 ORTHO05D002050 1.8e-37 159.8 140 59.3
Sp3g18630 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.5e-36 156.8 131 62.6
AL3G34450 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 2.2e-35 152.9 181 52.5
A05p28250 Brassica napus HOM05D001038 ORTHO05D019929 3.8e-35 152.1 130 60.8
BolC5t33084H Brassica oleracea HOM05D002065 ORTHO05D002050 8.5e-35 151.0 131 60.3
AT3G20590 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 2.5e-34 149.4 182 52.2
Aa31LG8G7400 Aethionema arabicum HOM05D002065 ORTHO05D002050 1.8e-32 143.3 148 54.7
BcaC05g28310 Brassica carinata HOM05D002065 ORTHO05D002050 5.7e-31 138.3 70 98.6
AT3G20610 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 2.2e-30 136.3 149 53.0
Aa31LG8G7410 Aethionema arabicum HOM05D002065 ORTHO05D002050 1.1e-29 134.0 149 53.7
THA.LOC104817885 Tarenaya hassleriana HOM05D002065 ORTHO05D002050 1.4e-29 133.7 141 54.6
Carub.0003s2058 Capsella rubella HOM05D002065 ORTHO05D002050 1.2e-28 130.6 182 45.1
BcaB06g26125 Brassica carinata HOM05D002065 ORTHO05D002050 2.0e-28 129.8 70 87.1
C05p43710 Brassica napus HOM05D002065 ORTHO05D002050 5.2e-24 115.2 57 96.5
RcHm_v2.0_Chr5g0037701 Rosa chinensis HOM05D002065 ORTHO05D002050 4.4e-23 112.1 140 46.4
Ciclev10009510m.g Citrus clementina HOM05D002065 ORTHO05D002050 1.7e-22 110.2 118 51.7
CARHR096390 Cardamine hirsuta HOM05D002065 ORTHO05D002050 2.8e-22 109.4 151 47.0
MD11G1225800 Malus domestica HOM05D002065 ORTHO05D002050 1.6e-20 103.6 146 44.5
Cpa.g.c26548.3 Carica papaya HOM05D002065 ORTHO05D002050 2.0e-20 103.2 144 43.8
Thhalv10022399m.g Eutrema salsugineum HOM05D002065 ORTHO05D002050 3.5e-20 102.4 90 57.8
FAN16G0462 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.5e-20 102.4 143 44.1
FAN21G3193 Fragaria x ananassa HOM05D002065 ORTHO05D002050 4.5e-20 102.1 143 44.1
FvH4_3g21890 Fragaria vesca HOM05D002065 ORTHO05D002050 2.2e-19 99.8 143 43.4
FAN11G3928 Fragaria x ananassa HOM05D002065 ORTHO05D002050 2.2e-19 99.8 143 43.4
QL08p013247 Quercus lobata HOM05D002065 ORTHO05D002050 2.5e-18 96.3 143 40.6
MD03G1211100 Malus domestica HOM05D002065 ORTHO05D002050 3.2e-18 95.9 148 41.9
AL3G34470 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 1.2e-17 94.0 149 44.3
MD03G1210900 Malus domestica HOM05D002065 ORTHO05D002050 1.2e-17 94.0 144 43.8
TWI39G0180 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 1.2e-17 94.0 113 50.4
MD03G1211000 Malus domestica HOM05D002065 ORTHO05D002050 2.1e-17 93.2 144 43.8
Haze_09616 Corylus avellana HOM05D002065 ORTHO05D002050 1.0e-16 90.9 141 40.4
Aqoxy4G02007 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 2.3e-16 89.7 143 40.6
Sabra16G0283800 Salix brachista HOM05D002065 ORTHO05D002050 2.3e-16 89.7 127 38.6
CiPaw.11G184100 Carya illinoinensis HOM05D002065 ORTHO05D002050 3.0e-16 89.4 144 41.7
TWI38G0302 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 4.0e-16 89.0 147 46.3
Manes.03G123200 Manihot esculenta HOM05D002065 ORTHO05D002050 6.8e-16 88.2 120 40.0
Atru.chr2.3214 Acer truncatum HOM05D002065 ORTHO05D002050 8.8e-16 87.8 145 42.1
Cc05_g13270 Coffea canephora HOM05D002065 ORTHO05D002050 8.8e-16 87.8 144 38.9
COL.COLO4_09575 Corchorus olitorius HOM05D002065 ORTHO05D002050 8.8e-16 87.8 137 42.3
Oeu042915.1 Olea europaea HOM05D002065 ORTHO05D002050 1.2e-15 87.4 109 44.0
Duzib213G0394 Durio zibethinus HOM05D002065 ORTHO05D002050 1.5e-15 87.0 113 45.1
Lj8P166T75 Lonicera japonica HOM05D002065 ORTHO05D002050 1.5e-15 87.0 112 43.8
Manes.15G076400 Manihot esculenta HOM05D002065 ORTHO05D002050 1.5e-15 87.0 140 38.6
Gorai.002G082700 Gossypium raimondii HOM05D002065 ORTHO05D002050 2.0e-15 86.7 137 41.6
Potri.001G418000 Populus trichocarpa HOM05D002065 ORTHO05D002050 4.4e-15 85.5 129 39.5
Thecc.07G052100 Theobroma cacao HOM05D002065 ORTHO05D002050 4.4e-15 85.5 138 42.0
ClCG05G014750 Citrullus lanatus HOM05D002065 ORTHO05D002050 5.7e-15 85.1 145 38.6
Gohir.A01G074800 Gossypium hirsutum HOM05D002065 ORTHO05D002050 7.5e-15 84.7 137 41.6
Actinidia35318 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.3e-14 84.0 141 39.0
Gohir.D01G061300 Gossypium hirsutum HOM05D002065 ORTHO05D002050 1.7e-14 83.6 137 40.9
SGA_v2.0_scaffold27G11640 Striga asiatica HOM05D002065 ORTHO05D002050 2.2e-14 83.2 116 45.7
Sed0007986 Sechium edule HOM05D002065 ORTHO05D002050 3.7e-14 82.4 139 38.1
Duzib170G0757 Durio zibethinus HOM05D002065 ORTHO05D002050 4.8e-14 82.0 138 42.0
Cfa020412 Carpinus fangiana HOM05D002065 ORTHO05D002050 6.3e-14 81.6 118 43.2
TAR629G2752 Trochodendron aralioides HOM05D002065 ORTHO05D002050 8.3e-14 81.3 115 39.1
Potri.011G133900 Populus trichocarpa HOM05D002065 ORTHO05D002050 1.4e-13 80.5 144 36.1
Duzib213G0251 Durio zibethinus HOM05D002065 ORTHO05D002050 1.8e-13 80.1 137 39.4
Oeu062613.1 Olea europaea HOM05D002065 ORTHO05D002050 1.8e-13 80.1 140 38.6
Sed0026241 Sechium edule HOM05D002065 ORTHO05D002050 2.4e-13 79.7 135 37.8
DCAR_022527 Daucus carota HOM05D002065 ORTHO05D002050 3.1e-13 79.3 137 42.3
Hma1.2p1_1564F.1_g290830 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 3.1e-13 79.3 146 41.1
PGR083G2635 Punica granatum HOM05D002065 ORTHO05D002050 3.1e-13 79.3 113 42.5
Sabra11G0120300 Salix brachista HOM05D002065 ORTHO05D002050 5.4e-13 78.6 145 41.4
Haze_09617 Corylus avellana HOM05D002065 ORTHO05D002050 7.0e-13 78.2 148 35.1
Dinv40711 Davidia involucrata HOM05D002065 ORTHO05D001766 7.0e-13 78.2 114 43.0
RhsimUnG0253100 Rhododendron simsii HOM05D002065 ORTHO05D002050 7.0e-13 78.2 146 35.6
Hma1.2p1_1869F.1_g306050 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 9.1e-13 77.8 135 37.0
Nn1g03652 Nelumbo nucifera HOM05D002065 ORTHO05D002050 9.1e-13 77.8 117 36.8
SalBow8G3023 Salvia bowleyana HOM05D002065 ORTHO05D002050 9.1e-13 77.8 117 39.3
BcaB06g26124 Brassica carinata HOM05D002065 ORTHO05D002050 2.7e-12 76.3 63 61.9
MELO3C018104.2 Cucumis melo HOM05D002065 ORTHO05D002050 2.7e-12 76.3 136 35.3
Migut.M00323 Erythranthe guttata HOM05D002065 ORTHO05D002050 2.7e-12 76.3 139 36.7
Nn1g07007 Nelumbo nucifera HOM05D002065 ORTHO05D002050 2.7e-12 76.3 146 34.2
Cfa020411 Carpinus fangiana HOM05D002065 ORTHO05D002050 3.5e-12 75.9 118 37.3
TAR626G0982 Trochodendron aralioides HOM05D002065 ORTHO05D002050 3.5e-12 75.9 130 40.0
Oeu007631.2 Olea europaea HOM05D002065 ORTHO05D002050 4.5e-12 75.5 136 36.8
Prupe.4G204400 Prunus persica HOM05D002065 ORTHO05D002050 5.9e-12 75.1 147 38.8
Eucgr.F00981 Eucalyptus grandis HOM05D002065 ORTHO05D002050 7.7e-12 74.7 117 41.0
Oeu007632.1 Olea europaea HOM05D002065 ORTHO05D002050 7.7e-12 74.7 136 36.8
CsaV3_3G023120 Cucumis sativus L. HOM05D002065 ORTHO05D002050 1.3e-11 73.9 115 37.4
Gorai.013G163600 Gossypium raimondii HOM05D002065 ORTHO05D002050 1.7e-11 73.6 113 38.9
Phvul.005G091900 Phaseolus vulgaris HOM05D002065 ORTHO05D002050 2.9e-11 72.8 115 38.3
Migut.M01810 Erythranthe guttata HOM05D002065 ORTHO05D002050 3.8e-11 72.4 136 37.5
SalBow7G4713 Salvia bowleyana HOM05D002065 ORTHO05D002050 5.0e-11 72.0 108 38.9
Dinv22303 Davidia involucrata HOM05D002065 ORTHO05D002050 6.5e-11 71.6 105 44.8
TAR626G1743 Trochodendron aralioides HOM05D002065 ORTHO05D002050 6.5e-11 71.6 140 37.9
Actinidia09932 Actinidia chinensis HOM05D002065 ORTHO05D002050 3.2e-10 69.3 116 38.8
MSTRG.14416 Avicennia marina HOM05D002065 ORTHO05D002050 1.2e-09 67.4 140 35.7
CANSAT64G1415 Cannabis sativa HOM05D002065 ORTHO05D002050 2.1e-09 66.6 154 37.0
Migut.M00312 Erythranthe guttata HOM05D002065 ORTHO05D002050 2.1e-09 66.6 172 33.1
Glyma.12G214100 Glycine max HOM05D002065 ORTHO05D002050 2.1e-09 66.6 115 36.5
Hma1.2p1_1869F.1_g306060 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 2.1e-09 66.6 146 38.4
arahy.Tifrunner.gnm1.ann1.TAH91K Arachis hypogaea HOM05D002065 ORTHO05D002050 2.7e-09 66.2 115 36.5
BcaC05g28307 Brassica carinata HOM05D002065 ORTHO05D002050 2.7e-09 66.2 60 56.7
Glyma.13G287500 Glycine max HOM05D002065 ORTHO05D002050 3.6e-09 65.9 114 34.2
MBI02_g10994_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 4.7e-09 65.5 115 33.9
VMungo1080G1659 Vigna mungo HOM05D002065 ORTHO05D002050 4.7e-09 65.5 111 34.2
EL10Ac4g07955 Beta vulgaris HOM05D002065 ORTHO05D002050 6.1e-09 65.1 115 41.7
PSO017G0621 Papaver somniferum HOM05D002065 ORTHO05D002050 6.1e-09 65.1 121 35.5
Psat5g251880 Pisum sativum HOM05D002065 ORTHO05D002050 1.0e-08 64.3 114 36.8
Gohir.A13G141050 Gossypium hirsutum HOM05D002065 ORTHO05D002050 1.8e-08 63.5 56 51.8
Aqoxy4G00180 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 4.0e-08 62.4 123 35.0
Lalb_Chr14g0366161 Lupinus albus HOM05D002065 ORTHO05D002050 4.0e-08 62.4 150 32.0
Psat7g161480 Pisum sativum HOM05D002065 ORTHO05D002050 4.0e-08 62.4 116 37.1
Lsat_1_v5_gn_5_5781 Lactuca sativa HOM05D002065 ORTHO05D002050 5.2e-08 62.0 106 36.8
MBI18_g44237_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 5.2e-08 62.0 142 31.0
TPR.G36815 Trifolium pratense HOM05D002065 ORTHO05D002050 5.2e-08 62.0 112 34.8
MBI18_g44238_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 8.8e-08 61.2 142 30.3
Medtr2g082990 Medicago truncatula HOM05D002065 ORTHO05D002050 1.2e-07 60.8 116 32.8
PSO675G5185 Papaver somniferum HOM05D002065 ORTHO05D002050 1.2e-07 60.8 121 33.1
Sc01g0007380 Simmondsia chinensis HOM05D002065 ORTHO05D002050 1.2e-07 60.8 136 28.7
Migut.M00324 Erythranthe guttata HOM05D002065 ORTHO05D002050 1.5e-07 60.5 115 31.3
Lj3g0020040 Lotus japonicus HOM05D002065 ORTHO05D002050 1.5e-07 60.5 147 35.4
PSO675G6218 Papaver somniferum HOM05D002065 ORTHO05D002050 1.5e-07 60.5 141 31.9
Eucgr.F00979 Eucalyptus grandis HOM05D002065 ORTHO05D002050 2.0e-07 60.1 88 45.5
Lsat_1_v5_gn_3_120800 Lactuca sativa HOM05D002065 ORTHO05D002050 2.6e-07 59.7 130 35.4
PGSC0003DMG400032231 Solanum tuberosum HOM05D002065 ORTHO05D002050 2.6e-07 59.7 107 33.6
Migut.M00328 Erythranthe guttata HOM05D002065 ORTHO05D002050 3.4e-07 59.3 126 30.2
PGSC0003DMG400032148 Solanum tuberosum HOM05D002065 ORTHO05D002050 3.4e-07 59.3 101 34.7
AUR62015652 Chenopodium quinoa HOM05D002065 ORTHO05D002050 4.4e-07 58.9 140 32.1
TPR.G25922 Trifolium pratense HOM05D002065 ORTHO05D002050 4.4e-07 58.9 133 32.3
AUR62020549 Chenopodium quinoa HOM05D002065 ORTHO05D002050 5.7e-07 58.5 140 32.9
Gorai.011G017400 Gossypium raimondii HOM05D002065 ORTHO05D002050 5.7e-07 58.5 124 30.6
MBI18_g41997_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 5.7e-07 58.5 114 32.5
Medtr4g081200 Medicago truncatula HOM05D002065 ORTHO05D002050 5.7e-07 58.5 117 35.9
Oeu025495.1 Olea europaea HOM05D002065 ORTHO05D002050 5.7e-07 58.5 114 38.6
AUR62015649 Chenopodium quinoa HOM05D002065 ORTHO05D002050 7.5e-07 58.2 109 34.9
Ca_01751_v3 Cicer arietinum L. HOM05D002065 ORTHO05D002050 7.5e-07 58.2 133 33.1
Gohir.A10G015700 Gossypium hirsutum HOM05D002065 ORTHO05D002050 7.5e-07 58.2 124 30.6
Oeu025507.1 Olea europaea HOM05D002065 ORTHO05D002050 9.8e-07 57.8 113 38.1
TAR626G1859 Trochodendron aralioides HOM05D002065 ORTHO05D002050 9.8e-07 57.8 109 31.2
TAR629G2849 Trochodendron aralioides HOM05D002065 ORTHO05D002050 9.8e-07 57.8 123 30.9
Aqoxy4G00179 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 1.3e-06 57.4 79 38.0
PSO732G0449 Papaver somniferum HOM05D002065 ORTHO05D002050 1.3e-06 57.4 121 31.4
ATR0794G057 Amborella trichopoda HOM05D002065 ORTHO05D002050 1.7e-06 57.0 117 35.0
Ciclev10016810m.g Citrus clementina HOM05D002065 ORTHO05D002050 1.7e-06 57.0 126 29.4
Oeu025490.1 Olea europaea HOM05D002065 ORTHO05D002050 1.7e-06 57.0 114 38.6
Oeu025506.1 Olea europaea HOM05D002065 ORTHO05D002050 1.7e-06 57.0 113 38.1
PSO541G2674 Papaver somniferum HOM05D002065 ORTHO05D002050 1.7e-06 57.0 124 25.8
Nitab4.5_0000092g0090 Nicotiana tabacum HOM05D002065 ORTHO05D002050 2.2e-06 56.6 91 35.2
EL10Ac4g07956 Beta vulgaris HOM05D002065 ORTHO05D002050 4.9e-06 55.5 100 35.0
PSO541G3356 Papaver somniferum HOM05D002065 ORTHO05D002050 4.9e-06 55.5 142 26.8
PSO541G3516 Papaver somniferum HOM05D002065 ORTHO05D002050 4.9e-06 55.5 135 30.4
Lj8C77T5 Lonicera japonica HOM05D002065 ORTHO05D002050 8.3e-06 54.7 149 30.2


User provided reference genes

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