Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 6.4e-73 277.3 141 100.0
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 6.4e-73 277.3 141 100.0
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 6.4e-73 277.3 141 100.0
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 6.4e-73 277.3 141 100.0
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.6e-68 262.7 141 95.7
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 7.6e-66 253.8 141 92.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 7.3e-61 237.3 141 87.2
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 2.8e-52 208.8 137 81.8
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 8.1e-52 207.2 136 81.6
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 2.4e-51 205.7 137 80.3
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 4.0e-51 204.9 137 80.3
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 5.3e-51 204.5 137 80.3
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 9.0e-43 177.2 143 71.3
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 6.5e-41 171.0 142 67.6
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 1.9e-40 169.5 142 68.3
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 4.2e-40 168.3 142 68.3
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-39 165.2 142 67.6
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.8e-38 162.9 142 66.2
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.1e-37 160.2 144 63.2
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.3e-36 154.5 141 63.8
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 3.8e-33 145.2 141 59.6
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.1e-32 143.7 143 61.5
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 1.6e-23 113.2 136 53.7
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.1e-19 99.0 141 47.5
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 4.1e-19 98.6 139 48.2
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 5.9e-18 94.7 53 81.1
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.3e-17 93.6 142 48.6
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.3e-17 93.6 53 79.2
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 2.9e-17 92.4 56 76.8
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 3.8e-17 92.0 53 81.1
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 3.8e-17 92.0 53 81.1
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 8.5e-17 90.9 53 79.2
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 8.5e-17 90.9 124 44.4
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-16 90.5 109 49.5
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 1.9e-16 89.7 53 79.2
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 1.9e-16 89.7 53 79.2
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 1.9e-16 89.7 53 79.2
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 4.2e-16 88.6 53 75.5
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 5.5e-16 88.2 94 57.4
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 5.5e-16 88.2 94 57.4
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 5.5e-16 88.2 94 57.4
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-15 87.0 97 57.7
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-15 87.0 97 57.7
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 2.1e-15 86.3 124 46.8
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 2.7e-15 85.9 48 81.2
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.4e-14 83.6 131 42.7
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 8.8e-14 80.9 55 65.5
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.5e-13 80.1 131 43.5
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.0e-13 79.7 58 65.5
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.0e-13 79.7 53 66.0
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.6e-13 79.3 134 38.1
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.3e-13 79.0 140 38.6
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 5.7e-13 78.2 53 64.2
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 5.7e-13 78.2 53 64.2
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 5.7e-13 78.2 55 60.0
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 7.4e-13 77.8 56 60.7
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 7.4e-13 77.8 65 58.5
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 7.4e-13 77.8 65 58.5
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 7.4e-13 77.8 65 58.5
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.3e-12 77.0 140 39.3
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 1.7e-12 76.6 58 63.8
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.2e-12 76.3 139 41.7
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.2e-12 76.3 133 40.6
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.8e-12 75.9 135 41.5
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 2.8e-12 75.9 51 66.7
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 2.8e-12 75.9 49 67.3
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 2.8e-12 75.9 52 61.5
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 3.7e-12 75.5 124 41.9
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.7e-12 75.5 65 56.9
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 3.7e-12 75.5 149 40.3
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.3e-12 74.7 134 39.6
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.3e-12 74.7 136 40.4
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 6.3e-12 74.7 49 67.3
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 8.2e-12 74.3 131 40.5
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 8.2e-12 74.3 52 65.4
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.2e-12 74.3 127 39.4
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 8.2e-12 74.3 57 63.2
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.1e-11 73.9 127 39.4
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-11 73.9 52 61.5
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 1.1e-11 73.9 50 64.0
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.4e-11 73.6 52 59.6
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.4e-11 73.6 84 52.4
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.8e-11 73.2 54 57.4
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-11 73.2 127 39.4
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.4e-11 72.8 51 66.7
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.1e-11 72.4 132 40.2
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 3.1e-11 72.4 138 42.8
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 5.3e-11 71.6 161 36.0
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 5.3e-11 71.6 136 39.0
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.3e-11 71.6 116 39.7
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 7.0e-11 71.2 50 60.0
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.0e-11 71.2 81 46.9
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 7.0e-11 71.2 52 59.6
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 9.1e-11 70.9 116 39.7
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 9.1e-11 70.9 52 55.8
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 9.1e-11 70.9 87 46.0
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 9.1e-11 70.9 87 46.0
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 9.1e-11 70.9 63 54.0
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 9.1e-11 70.9 87 46.0
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.2e-10 70.5 52 61.5
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.6e-10 70.1 91 46.2
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.6e-10 70.1 127 38.6
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.6e-10 70.1 96 43.8
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.0e-10 69.7 42 76.2
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 2.0e-10 69.7 56 60.7
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-10 69.7 56 60.7
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 2.0e-10 69.7 56 60.7
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.0e-10 69.7 49 59.2
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.0e-10 69.7 74 47.3
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 2.0e-10 69.7 49 63.3
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.0e-10 69.7 49 59.2
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 2.0e-10 69.7 96 39.6
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 2.6e-10 69.3 81 48.1
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.5e-10 68.9 50 62.0
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 3.5e-10 68.9 126 41.3
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 4.5e-10 68.6 135 35.6
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.5e-10 68.6 90 45.6
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 5.9e-10 68.2 50 58.0
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 7.7e-10 67.8 135 35.6
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 7.7e-10 67.8 132 35.6
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 7.7e-10 67.8 53 62.3
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 7.7e-10 67.8 134 38.8
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.0e-09 67.4 106 44.3
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 1.7e-09 66.6 59 55.9
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 1.7e-09 66.6 130 37.7
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.2e-09 66.2 53 54.7
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 2.2e-09 66.2 49 61.2
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 2.2e-09 66.2 123 37.4
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 2.2e-09 66.2 113 41.6
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.9e-09 65.9 53 54.7
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.9e-09 65.9 64 54.7
BcaB04g19133 Brassica carinata HOM05D003595 ORTHO05D004132 3.8e-09 65.5 44 79.5
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.8e-09 65.5 56 57.1
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.0e-09 65.1 135 38.5
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 6.5e-09 64.7 99 44.4
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 8.5e-09 64.3 108 39.8
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 8.5e-09 64.3 51 52.9
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.1e-08 63.9 63 50.8
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 1.1e-08 63.9 92 45.7
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.1e-08 63.9 51 56.9
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 1.1e-08 63.9 58 50.0
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.1e-08 63.9 52 61.5
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.5e-08 63.5 55 58.2
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.5e-08 63.5 48 60.4
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 1.5e-08 63.5 56 55.4
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.9e-08 63.2 55 54.5
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.9e-08 63.2 60 50.0
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 1.9e-08 63.2 52 61.5
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 3.2e-08 62.4 59 47.5
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.2e-08 62.4 131 35.1
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 4.2e-08 62.0 51 52.9
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.2e-08 62.0 64 53.1
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 4.2e-08 62.0 101 41.6
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 7.2e-08 61.2 73 42.5
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 7.2e-08 61.2 139 36.0
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 9.4e-08 60.8 54 53.7
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 9.4e-08 60.8 51 54.9
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 9.4e-08 60.8 51 54.9
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 1.6e-07 60.1 54 50.0
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.6e-07 60.1 55 50.9
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.6e-07 60.1 108 41.7
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 2.1e-07 59.7 129 39.5
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 2.1e-07 59.7 49 55.1
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 2.7e-07 59.3 59 50.8
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.7e-07 58.5 134 38.8
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.7e-07 58.5 134 38.8
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.1e-07 58.2 54 53.7
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.1e-07 58.2 78 42.3
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.1e-07 58.2 78 42.3
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 8.0e-07 57.8 81 39.5
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 1.0e-06 57.4 51 58.8
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.4e-06 57.0 55 49.1
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-06 57.0 134 38.8
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.8e-06 56.6 55 49.1
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.8e-06 56.6 52 53.8
VMungo1215G0977 Vigna mungo HOM05D002383 ORTHO05D002515 2.3e-06 56.2 57 42.1
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.0e-06 55.8 60 50.0
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.0e-06 55.5 52 53.8
PGR142G2811 Punica granatum HOM05D002383 ORTHO05D002515 6.7e-06 54.7 47 55.3
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 8.8e-06 54.3 60 46.7


User provided reference genes

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