Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32848H Brassica oleracea HOM05D008163 ORTHO05D010305 7.6e-127 457.2 237 100.0
BcaC05g28083 Brassica carinata HOM05D008163 ORTHO05D010305 5.3e-120 434.5 237 96.6
C05p41060 Brassica napus HOM05D008163 ORTHO05D010305 5.3e-120 434.5 237 96.6
A05p26470 Brassica napus HOM05D008163 ORTHO05D010305 1.8e-99 366.3 234 85.9
BraA05t21520Z Brassica rapa HOM05D008163 ORTHO05D010305 1.8e-99 366.3 234 85.9
BcaB06g26334 Brassica carinata HOM05D008163 ORTHO05D010305 6.5e-94 347.8 233 82.0
Thhalv10021368m.g Eutrema salsugineum HOM05D008163 ORTHO05D010305 5.7e-90 334.7 248 73.8
Sp3g20090 Schrenkiella parvula HOM05D008163 ORTHO05D010305 3.7e-89 332.0 248 75.4
AL3G36570 Arabidopsis lyrata HOM05D008163 ORTHO05D010305 4.4e-82 308.5 237 72.2
A03p42710 Brassica napus HOM05D008163 ORTHO05D010305 3.1e-80 302.4 235 74.0
AT3G22300 Arabidopsis thaliana HOM05D008163 ORTHO05D010305 5.3e-80 301.6 237 70.9
BcaC01g03452 Brassica carinata HOM05D008163 ORTHO05D010305 7.0e-80 301.2 237 72.2
C03p52430 Brassica napus HOM05D008163 ORTHO05D010305 7.0e-80 301.2 237 72.2
BolC3t17513H Brassica oleracea HOM05D008163 ORTHO05D010305 7.0e-80 301.2 237 72.2
Carub.0003s2247 Capsella rubella HOM05D008163 ORTHO05D010305 1.3e-78 297.0 241 70.1
BraA03t13418Z Brassica rapa HOM05D008163 ORTHO05D010305 1.7e-78 296.6 235 72.8
CARHR098200 Cardamine hirsuta HOM05D008163 ORTHO05D010305 1.0e-75 287.3 244 65.2
Aa31LG8G8870 Aethionema arabicum HOM05D008163 ORTHO05D010305 1.6e-71 273.5 242 64.9
MD15G1374400 Malus domestica HOM05D008163 ORTHO05D010305 8.3e-33 144.8 105 66.7
MD12G1044600 Malus domestica HOM05D008163 ORTHO05D010305 2.1e-31 140.2 99 68.7
Prupe.4G282300 Prunus persica HOM05D008163 ORTHO05D010305 2.1e-31 140.2 104 64.4
Potri.007G072900 Populus trichocarpa HOM05D008163 ORTHO05D010305 2.7e-31 139.8 108 64.8
Prupe.7G030100 Prunus persica HOM05D008163 ORTHO05D010305 6.0e-31 138.7 98 67.3
Sabra07G0061500 Salix brachista HOM05D008163 ORTHO05D010305 7.8e-31 138.3 148 52.7
Sabra15G0022500 Salix brachista HOM05D008163 ORTHO05D010305 7.8e-31 138.3 108 64.8
Hma1.2p1_0136F.1_g062003 Hydrangea macrophylla HOM05D008163 ORTHO05D010305 4.3e-29 132.5 108 60.2
SHI03043 Sapria himalayana HOM05D008163 ORTHO05D010305 6.8e-27 125.2 94 67.0
Hund21444 Selenicereus undatus HOM05D008163 ORTHO05D010305 1.5e-26 124.0 107 56.1
FvH4_7g02510 Fragaria vesca HOM05D008163 ORTHO05D010305 3.4e-26 122.9 98 65.3
FAN03G0237 Fragaria x ananassa HOM05D008163 ORTHO05D010305 3.4e-26 122.9 98 65.3
FAN06G4466 Fragaria x ananassa HOM05D008163 ORTHO05D010305 3.4e-26 122.9 98 65.3
RcHm_v2.0_Chr1g0321141 Rosa chinensis HOM05D008163 ORTHO05D010305 4.4e-26 122.5 98 64.3
DCAR_027582 Daucus carota HOM05D008163 ORTHO05D010305 2.9e-25 119.8 96 57.3
RcHm_v2.0_Chr2g0149911 Rosa chinensis HOM05D008163 ORTHO05D010305 6.4e-25 118.6 98 64.3
SalBow1G5351 Salvia bowleyana HOM05D008163 ORTHO05D010305 6.4e-25 118.6 94 61.7
SalBow1G7817 Salvia bowleyana HOM05D008163 ORTHO05D010305 6.4e-25 118.6 94 61.7
Solyc11g063600.3 Solanum lycopersicum HOM05D008163 ORTHO05D010305 8.3e-25 118.2 108 57.4
Os12g0517200 Oryza sativa ssp. japonica HOM05D008163 ORTHO05D010305 3.2e-24 116.3 97 57.7
AUR62012772 Chenopodium quinoa HOM05D008163 ORTHO05D010305 5.4e-24 115.5 98 59.2
AUR62021886 Chenopodium quinoa HOM05D008163 ORTHO05D010305 7.1e-24 115.2 98 58.2
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.1e-23 113.6 114 50.0
Ah.14g087810 Amaranthus hybridus HOM05D000967 ORTHO05D000796 2.3e-22 110.2 98 54.1
Zm00001eb215210 Zea mays HOM05D008163 ORTHO05D010305 3.9e-22 109.4 99 52.5
EL10Ac8g20156 Beta vulgaris HOM05D008163 ORTHO05D010305 6.6e-22 108.6 90 58.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 8.6e-22 108.2 99 54.5
AUR62036216 Chenopodium quinoa HOM05D008163 ORTHO05D010305 1.1e-21 107.8 98 55.1
Zm00001eb056700 Zea mays HOM05D008163 ORTHO05D010305 1.1e-21 107.8 99 52.5
Nn1g09991 Nelumbo nucifera HOM05D008163 ORTHO05D010305 1.5e-21 107.5 89 59.6
Nn1g10091 Nelumbo nucifera HOM05D008163 ORTHO05D010305 1.5e-21 107.5 89 59.6
Prupe.7G029400 Prunus persica HOM05D008163 ORTHO05D010305 5.6e-21 105.5 66 75.8
Manes.09G036100 Manihot esculenta HOM05D008163 ORTHO05D010305 2.1e-20 103.6 114 47.4
Actinidia29350 Actinidia chinensis HOM05D008163 ORTHO05D010305 6.2e-20 102.1 83 57.8
Rhsim06G0223600 Rhododendron simsii HOM05D000504 ORTHO05D000403 6.2e-20 102.1 75 66.7
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 8.1e-20 101.7 111 47.7
PSO170G4613 Papaver somniferum HOM05D008163 ORTHO05D010305 1.8e-19 100.5 106 47.2
TPR.G20554 Trifolium pratense HOM05D008163 ORTHO05D010305 1.8e-19 100.5 94 54.3
Lalb_Chr00c21g0405831 Lupinus albus HOM05D008163 ORTHO05D010305 4.0e-19 99.4 89 57.3
PSO017G7110 Papaver somniferum HOM05D008163 ORTHO05D010305 8.9e-19 98.2 71 64.8
CSS0033547 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 9.9e-18 94.7 79 59.5
CSS0047821 Camellia sinensis var. sinensis HOM05D008163 ORTHO05D010305 9.9e-18 94.7 79 59.5
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 3.8e-17 92.8 96 52.1
SEGI_07019 Sequoiadendron giganteum HOM05D008163 ORTHO05D010305 4.9e-17 92.4 108 47.2
Nitab4.5_0000592g0150 Nicotiana tabacum HOM05D008163 ORTHO05D010305 8.4e-17 91.7 87 54.0
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.1e-15 87.0 77 55.8
MD07G1062900 Malus domestica HOM05D008163 ORTHO05D010305 3.9e-14 82.8 69 55.1
Pp3c3_3090 Physcomitrium patens HOM05D008163 ORTHO05D010305 1.5e-13 80.9 76 52.6
AagrBONN_evm.TU.Sc2ySwM_368.972 Anthoceros agrestis HOM05D008163 ORTHO05D010305 3.3e-13 79.7 76 48.7
Glyma.17G185500 Glycine max HOM05D008163 ORTHO05D010305 1.1e-11 74.7 74 51.4
Nitab4.5_0001702g0010 Nicotiana tabacum HOM05D011509 ORTHO05D010305 9.9e-10 68.2 60 55.0
SMO196G0141 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 1.7e-09 67.4 76 39.5
SMO234G0032 Selaginella moellendorffii HOM05D008163 ORTHO05D010305 1.7e-09 67.4 76 39.5
Aa31LG9G2370 Aethionema arabicum HOM05D000032 ORTHO05D004222 1.7e-06 57.4 138 37.0
FAN10G0940 Fragaria x ananassa HOM05D008163 ORTHO05D010305 1.7e-06 57.4 42 64.3


User provided reference genes

Program Settings