Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32655H Brassica oleracea HOM05D020469 ORTHO05D022045 1.2e-80 303.1 153 100.0
C05p39220 Brassica napus HOM05D020469 ORTHO05D022045 5.9e-80 300.8 153 99.3
C02p24540 Brassica napus HOM05D020469 ORTHO05D022045 9.4e-78 293.5 153 97.4
BolC2t07195H Brassica oleracea HOM05D020469 ORTHO05D022045 9.4e-78 293.5 153 96.7
C03p64770 Brassica napus HOM05D020469 ORTHO05D022045 1.4e-73 279.6 155 92.9
BolC3t18740H Brassica oleracea HOM05D020469 ORTHO05D022045 1.5e-72 276.2 155 92.3
A06p10790 Brassica napus HOM05D000222 ORTHO05D004962 5.6e-30 134.8 87 86.2
BraA06t24257Z Brassica rapa HOM05D000222 ORTHO05D004962 5.6e-30 134.8 87 86.2
BcaB02g06545 Brassica carinata HOM05D000222 ORTHO05D004962 5.2e-28 128.3 90 83.3
BcaC05g25393 Brassica carinata HOM05D000222 ORTHO05D004962 5.2e-28 128.3 88 84.1
C05p12690 Brassica napus HOM05D000222 ORTHO05D004962 5.2e-28 128.3 88 84.1
BolC5t30012H Brassica oleracea HOM05D000222 ORTHO05D004962 5.2e-28 128.3 88 84.1
AL1G26750 Arabidopsis lyrata HOM05D000222 ORTHO05D004962 1.7e-26 123.2 89 78.7
Sp1g13180 Schrenkiella parvula HOM05D000222 ORTHO05D004962 1.7e-26 123.2 88 79.5
AT1G14740 Arabidopsis thaliana HOM05D000222 ORTHO05D004962 2.2e-26 122.9 89 77.5
Carub.0001s1452 Capsella rubella HOM05D000222 ORTHO05D004962 2.9e-26 122.5 89 78.7
Thhalv10006891m.g Eutrema salsugineum HOM05D000222 ORTHO05D004962 6.4e-26 121.3 88 78.4
Aa31LG1G350 Aethionema arabicum HOM05D000222 ORTHO05D004962 1.5e-22 110.2 92 69.6
THA.LOC104805095 Tarenaya hassleriana HOM05D000222 ORTHO05D004962 2.0e-19 99.8 92 67.4
BcaC07g38759 Brassica carinata HOM05D000222 ORTHO05D004962 1.4e-17 93.6 88 62.5
C08p16900 Brassica napus HOM05D000222 ORTHO05D004962 1.4e-17 93.6 88 62.5
BolC8t49317H Brassica oleracea HOM05D000222 ORTHO05D004962 1.4e-17 93.6 88 62.5
BcaB03g13083 Brassica carinata HOM05D000222 ORTHO05D004962 2.7e-16 89.4 88 65.9
Lj2g0002621 Lotus japonicus HOM05D000222 ORTHO05D004962 8.4e-10 67.8 96 46.9
VMungo0251G0007 Vigna mungo HOM05D000222 ORTHO05D004962 2.4e-09 66.2 108 43.5
Lsat_1_v5_gn_2_36420 Lactuca sativa HOM05D000222 ORTHO05D004962 3.2e-09 65.9 95 46.3
arahy.Tifrunner.gnm1.ann1.EPT9JX Arachis hypogaea HOM05D000222 ORTHO05D004962 5.4e-09 65.1 109 42.2
arahy.Tifrunner.gnm1.ann1.J9EPM7 Arachis hypogaea HOM05D000222 ORTHO05D004962 5.4e-09 65.1 109 42.2
Phvul.002G182200 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 7.1e-09 64.7 108 43.5
Lalb_Chr13g0293651 Lupinus albus HOM05D000222 ORTHO05D004962 9.2e-09 64.3 112 41.1
Migut.E00527 Erythranthe guttata HOM05D000222 ORTHO05D004962 3.5e-08 62.4 109 42.2
Phvul.003G014700 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 3.5e-08 62.4 104 46.2
VMungo1215G2627 Vigna mungo HOM05D000222 ORTHO05D004962 3.5e-08 62.4 105 44.8
TPR.G5124 Trifolium pratense HOM05D000222 ORTHO05D004962 6.0e-08 61.6 104 43.3
Duzib248G1586 Durio zibethinus HOM05D000222 ORTHO05D004962 1.7e-07 60.1 122 37.7
Duzib251G0369 Durio zibethinus HOM05D000222 ORTHO05D004962 1.7e-07 60.1 121 38.0
Lj4g0012229 Lotus japonicus HOM05D000222 ORTHO05D004962 1.7e-07 60.1 109 40.4
Lalb_Chr07g0187811 Lupinus albus HOM05D000222 ORTHO05D004962 1.7e-07 60.1 112 41.1
Cpa.g.sc2.140 Carica papaya HOM05D000222 ORTHO05D004962 2.3e-07 59.7 116 39.7
Gorai.013G031700 Gossypium raimondii HOM05D000222 ORTHO05D004962 2.3e-07 59.7 115 40.9
unitig_52.g17291 Utricularia gibba HOM05D000222 ORTHO05D004962 2.3e-07 59.7 111 44.1
Glyma.07G174100 Glycine max HOM05D000222 ORTHO05D004962 3.0e-07 59.3 103 42.7
Glyma.20G012600 Glycine max HOM05D000222 ORTHO05D004962 3.0e-07 59.3 103 43.7
Hma1.2p1_0037F.1_g023820 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 3.0e-07 59.3 116 42.2
CAN.G647.5 Capsicum annuum HOM05D000222 ORTHO05D004962 3.9e-07 58.9 100 41.0
Rhsim09G0086600 Rhododendron simsii HOM05D000222 ORTHO05D004962 3.9e-07 58.9 115 40.0
Thecc.02G305400 Theobroma cacao HOM05D000222 ORTHO05D004962 3.9e-07 58.9 120 38.3
Atru.chr11.750 Acer truncatum HOM05D000222 ORTHO05D004962 5.1e-07 58.5 114 41.2
ClCG01G006740 Citrullus lanatus HOM05D000222 ORTHO05D004962 5.1e-07 58.5 99 44.4
DCAR_030303 Daucus carota HOM05D000222 ORTHO05D004962 5.1e-07 58.5 112 40.2
Actinidia20114 Actinidia chinensis HOM05D000222 ORTHO05D004962 6.6e-07 58.2 112 42.0
Psat7g083280 Pisum sativum HOM05D000222 ORTHO05D004962 6.6e-07 58.2 108 43.5
DCAR_023547 Daucus carota HOM05D000222 ORTHO05D004962 8.6e-07 57.8 112 38.4
ECA234G2546 Erigeron canadensis HOM05D000222 ORTHO05D004962 8.6e-07 57.8 83 42.2
Lj3A861T64 Lonicera japonica HOM05D000222 ORTHO05D004962 1.1e-06 57.4 108 43.5
Lj6A732T72 Lonicera japonica HOM05D000222 ORTHO05D004962 1.1e-06 57.4 105 41.9
Lalb_Chr12g0209391 Lupinus albus HOM05D000222 ORTHO05D004962 1.1e-06 57.4 112 41.1
Sed0000815 Sechium edule HOM05D000222 ORTHO05D004962 1.1e-06 57.4 99 43.4
MSTRG.13646 Avicennia marina HOM05D000222 ORTHO05D004962 1.5e-06 57.0 114 41.2
Ciclev10014296m.g Citrus clementina HOM05D000222 ORTHO05D004962 1.5e-06 57.0 118 40.7
COL.COLO4_27597 Corchorus olitorius HOM05D000222 ORTHO05D004962 1.5e-06 57.0 122 37.7
Actinidia12434 Actinidia chinensis HOM05D000222 ORTHO05D004962 1.9e-06 56.6 112 40.2
MSTRG.2110 Avicennia marina HOM05D000222 ORTHO05D004962 1.9e-06 56.6 111 41.4
MELO3C005247.2 Cucumis melo HOM05D000222 ORTHO05D004962 1.9e-06 56.6 99 42.4
Glyma.05G138900 Glycine max HOM05D000222 ORTHO05D004962 1.9e-06 56.6 113 40.7
Cc11_g05940 Coffea canephora HOM05D000222 ORTHO05D004962 2.5e-06 56.2 113 39.8
Dinv14377 Davidia involucrata HOM05D000222 ORTHO05D004962 2.5e-06 56.2 112 42.0
FvH4_4g33110 Fragaria vesca HOM05D000222 ORTHO05D004962 2.5e-06 56.2 111 40.5
FAN07G1810 Fragaria x ananassa HOM05D000222 ORTHO05D004962 2.5e-06 56.2 111 40.5
FAN12G2155 Fragaria x ananassa HOM05D000222 ORTHO05D004962 2.5e-06 56.2 111 40.5
FAN22G0304 Fragaria x ananassa HOM05D000222 ORTHO05D004962 2.5e-06 56.2 111 40.5
MD13G1016800 Malus domestica HOM05D000222 ORTHO05D004962 2.5e-06 56.2 116 37.9
MD16G1014700 Malus domestica HOM05D000222 ORTHO05D004962 3.3e-06 55.8 116 38.8
CsaV3_5G027810 Cucumis sativus L. HOM05D000222 ORTHO05D004962 4.3e-06 55.5 100 43.0
Manes.15G137700 Manihot esculenta HOM05D000222 ORTHO05D004962 4.3e-06 55.5 118 38.1
Manes.17G086800 Manihot esculenta HOM05D000222 ORTHO05D004962 4.3e-06 55.5 120 38.3
ECA246G4790 Erigeron canadensis HOM05D000222 ORTHO05D004962 5.6e-06 55.1 103 46.6
Prupe.1G336600 Prunus persica HOM05D000222 ORTHO05D004962 5.6e-06 55.1 111 38.7
SGA_v2.0_scaffold65G22111 Striga asiatica HOM05D000222 ORTHO05D004962 5.6e-06 55.1 108 40.7
Actinidia38426 Actinidia chinensis HOM05D000222 ORTHO05D004962 9.6e-06 54.3 112 38.4
PSO063G5028 Papaver somniferum HOM05D000222 ORTHO05D004962 9.6e-06 54.3 114 37.7
PSO782G4980 Papaver somniferum HOM05D000222 ORTHO05D004962 9.6e-06 54.3 114 37.7


User provided reference genes

Program Settings