Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.1e-247 858.6 444 100.0
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 9.9e-237 823.2 444 96.8
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 9.9e-237 823.2 444 96.8
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.8e-230 802.4 445 95.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 3.2e-219 765.0 446 88.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.5e-208 728.8 465 84.3
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.4e-198 695.7 459 81.7
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.5e-195 684.5 464 79.5
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.2e-194 683.3 467 79.9
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 7.9e-194 680.6 465 79.1
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.7e-192 674.5 466 77.9
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.9e-180 635.6 465 73.1
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 3.1e-150 535.8 471 61.8
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.2e-125 454.1 473 55.2
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 5.6e-123 445.3 474 55.7
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.7e-122 442.2 474 55.5
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.3e-121 439.9 474 54.9
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 2.9e-119 433.0 462 53.0
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.1e-118 431.0 467 53.1
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 5.4e-118 428.7 449 56.8
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.6e-117 427.2 480 51.7
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 3.0e-116 422.9 452 56.9
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.9e-115 420.2 482 52.5
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.1e-113 414.5 494 51.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.7e-111 407.1 469 48.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.4e-110 404.1 501 49.7
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.6e-109 400.6 473 51.2
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 6.0e-109 398.7 524 47.9
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 3.0e-108 396.4 485 50.3
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.5e-107 394.0 462 49.6
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 2.5e-107 393.3 467 47.5
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 7.3e-107 391.7 467 46.7
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 9.6e-107 391.3 474 49.4
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.8e-106 389.8 465 49.9
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 4.8e-106 389.0 489 49.5
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 4.8e-106 389.0 509 48.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.1e-105 387.9 457 50.1
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.1e-105 387.9 473 47.4
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.1e-105 387.9 470 50.9
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.4e-105 386.7 490 49.0
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 4.0e-105 386.0 480 50.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.8e-104 382.1 473 47.1
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 9.9e-104 381.3 448 50.7
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.3e-103 380.9 460 48.3
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.3e-103 380.9 506 45.8
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.7e-103 380.6 482 48.3
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.2e-103 380.2 471 48.8
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.2e-103 380.2 479 48.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.8e-103 379.4 527 46.1
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 4.9e-103 379.0 488 47.5
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 4.9e-103 379.0 473 46.9
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.4e-103 378.6 466 47.4
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 8.4e-103 378.3 502 48.2
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 8.4e-103 378.3 476 48.1
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.9e-102 377.1 466 47.2
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.9e-102 377.1 467 47.5
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 2.4e-102 376.7 488 47.3
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.2e-102 375.9 466 47.0
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 5.4e-102 375.6 462 48.1
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 9.3e-102 374.8 466 46.8
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.2e-101 374.4 471 49.5
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.1e-101 373.6 500 47.6
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 3.5e-101 372.9 487 46.8
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.6e-101 372.5 518 45.6
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.6e-101 372.5 518 45.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 6.0e-101 372.1 453 49.4
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.0e-100 371.3 459 48.1
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.3e-100 370.9 480 49.6
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 3.9e-100 369.4 464 46.3
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 5.1e-100 369.0 485 46.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.5e-99 367.5 444 48.2
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.3e-99 365.9 483 47.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.6e-98 364.0 476 46.6
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.8e-97 360.5 468 48.7
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.4e-96 356.3 518 43.1
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 3.4e-96 356.3 505 45.1
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.3e-95 354.4 471 46.9
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.2e-95 353.6 470 46.4
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 2.9e-95 353.2 465 47.1
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 6.4e-95 352.1 504 46.2
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 6.4e-95 352.1 457 47.3
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 6.4e-95 352.1 463 44.9
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 7.1e-94 348.6 459 46.4
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 7.1e-94 348.6 503 43.5
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.6e-93 347.4 459 45.5
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 3.0e-92 343.2 337 55.8
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.1e-91 341.3 473 45.7
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 9.6e-91 338.2 474 46.0
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 8.1e-90 335.1 396 47.2
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 8.1e-90 335.1 396 47.2
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.1e-89 334.7 388 47.4
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 9.0e-89 331.6 396 47.5
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-88 331.3 434 45.9
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 4.5e-88 329.3 454 43.8
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 4.9e-87 325.9 402 47.3
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.9e-87 325.9 417 49.4
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.4e-86 324.3 487 43.5
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.9e-86 323.9 380 54.5
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.5e-86 323.6 458 43.9
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.2e-86 323.2 471 43.5
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 3.0e-84 316.6 437 46.0
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 8.2e-82 308.5 355 49.0
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 6.9e-81 305.4 462 41.8
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.3e-79 301.2 454 42.1
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.2e-79 300.4 448 42.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.6e-77 294.3 552 38.4
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 3.9e-76 289.7 465 40.9
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.9e-76 289.7 455 41.5
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 6.3e-74 282.3 463 41.7
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 2.4e-73 280.4 394 45.4
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.3e-73 279.3 357 48.5
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 3.2e-70 270.0 467 40.3
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.8e-68 261.9 430 40.2
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.8e-66 256.9 331 45.9
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.4e-65 254.6 416 39.4
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 3.8e-63 246.5 462 37.4
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 7.9e-61 238.8 465 37.8
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 2.3e-60 237.3 476 37.2
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.0e-59 234.2 453 37.3
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 7.4e-59 232.3 322 42.2
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 1.0e-55 221.9 447 37.6
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.3e-55 221.5 403 37.2
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.5e-48 196.4 724 26.8
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.8e-39 166.8 211 46.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 4.7e-37 159.8 205 46.8
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.4e-36 158.3 366 34.7
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 2.3e-36 157.5 204 48.0
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 3.0e-36 157.1 503 29.0
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 7.5e-35 152.5 667 25.9
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 6.3e-34 149.4 204 45.1
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 5.9e-32 142.9 582 26.3
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 5.2e-28 129.8 598 25.3
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 5.9e-24 116.3 205 37.1
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.3e-22 110.5 164 38.4
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 3.3e-22 110.5 189 38.6
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.6e-21 108.2 513 25.1
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.6e-21 108.2 206 37.9
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 2.1e-21 107.8 135 45.2
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.3e-20 104.4 189 37.6
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.3e-18 95.9 156 37.8
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.1e-17 95.5 163 36.2
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.1e-17 93.6 165 33.3
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.3e-15 88.6 95 49.5
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.7e-15 88.2 75 56.0
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 3.0e-15 87.4 197 28.9
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.0e-15 87.4 190 34.2
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.9e-14 84.7 593 21.9
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.9e-14 84.7 69 52.2
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 7.3e-14 82.8 348 25.6
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.2e-13 82.0 117 44.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.8e-13 80.9 199 30.2
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 7.5e-11 72.8 109 47.7
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 4.1e-09 67.0 106 46.2
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 9.2e-09 65.9 101 40.6
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.2e-08 65.5 170 33.5
Aa31LG6G7990 Aethionema arabicum HOM05D004572 ORTHO05D005425 7.8e-08 62.8 59 62.7
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.3e-07 62.0 64 48.4
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 3.9e-07 60.5 47 53.2
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 8.6e-07 59.3 198 30.3
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.1e-06 58.9 252 28.6
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 1.9e-06 58.2 192 30.7
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 1.9e-06 58.2 93 41.9
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 1.9e-06 58.2 150 31.3
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 2.5e-06 57.8 186 30.1
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 4.3e-06 57.0 194 27.3
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 9.5e-06 55.8 95 34.7


User provided reference genes

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