Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 3.1e-102 375.2 191 100.0
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 2.3e-81 305.8 191 85.3
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 2.3e-81 305.8 191 85.3
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 4.4e-77 291.6 195 79.0
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 2.2e-76 289.3 191 79.1
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 2.9e-76 288.9 191 77.0
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 3.2e-75 285.4 191 77.5
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.3e-73 280.0 191 75.9
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 3.0e-73 278.9 191 74.9
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 3.0e-73 278.9 191 74.9
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 5.1e-73 278.1 191 74.9
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 6.6e-73 277.7 191 74.3
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 4.3e-72 275.0 191 71.7
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 9.6e-72 273.9 191 73.3
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 9.6e-72 273.9 191 73.3
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 4.8e-71 271.6 191 72.8
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 5.8e-69 264.6 191 70.7
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 3.2e-67 258.8 191 68.6
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.3e-65 252.7 191 67.0
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 2.4e-62 242.7 191 63.9
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 2.6e-61 239.2 191 63.4
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 3.4e-61 238.8 191 62.8
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 1.3e-60 236.9 191 63.4
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 2.2e-60 236.1 191 63.4
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 2.2e-60 236.1 191 63.4
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 1.4e-59 233.4 191 62.3
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.9e-59 233.0 191 61.3
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 2.4e-59 232.6 191 59.7
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 2.4e-59 232.6 191 60.2
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.4e-59 232.6 191 61.3
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 3.2e-59 232.3 191 61.8
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 4.2e-59 231.9 191 61.8
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 5.5e-59 231.5 191 63.4
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 1.2e-58 230.3 191 61.3
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 2.1e-58 229.6 191 61.3
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 2.7e-58 229.2 191 62.8
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 6.0e-58 228.0 191 59.7
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 6.0e-58 228.0 191 60.7
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.0e-57 227.3 191 60.7
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.0e-57 227.3 191 61.3
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.8e-57 226.5 191 60.7
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.3e-57 226.1 191 60.2
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 3.9e-57 225.3 191 60.2
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 5.1e-57 224.9 191 59.2
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 5.1e-57 224.9 191 60.2
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.1e-57 224.9 189 59.3
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 6.7e-57 224.6 191 59.2
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.1e-56 223.8 160 70.6
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.1e-56 223.8 190 58.9
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.9e-56 223.0 186 60.8
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 2.5e-56 222.6 191 59.2
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 2.5e-56 222.6 191 57.1
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.5e-56 222.6 191 59.2
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.5e-56 222.6 191 59.2
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 2.5e-56 222.6 191 59.2
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.3e-56 222.2 191 58.6
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.3e-56 222.2 191 58.6
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 3.3e-56 222.2 191 59.7
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 3.3e-56 222.2 191 58.6
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 4.3e-56 221.9 191 59.7
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 5.6e-56 221.5 191 58.6
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 7.4e-56 221.1 191 57.1
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 2.1e-55 219.5 191 58.6
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.8e-55 219.2 191 58.1
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 2.8e-55 219.2 191 58.6
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 4.8e-55 218.4 191 58.6
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 6.2e-55 218.0 191 57.1
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 6.2e-55 218.0 190 56.8
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 8.1e-55 217.6 191 59.7
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 1.8e-54 216.5 191 55.0
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.8e-54 216.5 190 56.8
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 1.8e-54 216.5 191 57.1
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 4.0e-54 215.3 187 57.2
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 5.3e-54 214.9 191 55.5
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 6.9e-54 214.5 186 59.1
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 6.9e-54 214.5 191 57.6
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 1.2e-53 213.8 191 55.0
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 1.2e-53 213.8 191 55.0
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.2e-53 213.8 191 57.1
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 1.2e-53 213.8 191 55.0
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 1.5e-53 213.4 191 55.0
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.5e-53 213.4 191 55.5
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 2.6e-53 212.6 191 56.0
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 2.6e-53 212.6 191 58.6
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 3.4e-53 212.2 191 55.5
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 3.4e-53 212.2 191 56.0
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 5.8e-53 211.5 191 55.5
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 7.6e-53 211.1 191 57.6
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 1.0e-52 210.7 191 53.9
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 2.2e-52 209.5 191 55.0
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 2.9e-52 209.1 201 56.2
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.9e-52 209.1 191 54.5
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 4.9e-52 208.4 191 55.0
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 7.1e-51 204.5 191 54.5
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 4.6e-50 201.8 191 53.4
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 4.6e-50 201.8 191 53.9
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 6.0e-50 201.4 191 53.9
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 1.3e-49 200.3 191 51.8
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.3e-49 199.5 191 52.9
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 6.7e-49 198.0 191 50.3
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 8.7e-49 197.6 188 51.1
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 2.8e-47 192.6 191 51.8
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 4.8e-47 191.8 191 51.3
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 5.3e-46 188.3 189 47.6
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 2.6e-45 186.0 198 49.5
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 1.4e-43 180.3 191 49.2
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 1.4e-43 180.3 226 47.8
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.5e-43 179.5 191 47.1
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 1.3e-41 173.7 191 50.8
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 6.7e-41 171.4 188 52.1
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.6e-37 159.5 191 42.4
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 7.7e-37 157.9 125 64.8
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.3e-36 157.1 191 46.1
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.9e-35 153.3 197 45.2
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.9e-35 153.3 197 45.2
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.2e-35 152.5 159 49.1
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 1.0e-33 147.5 144 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 6.3e-31 138.3 196 39.8
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 5.9e-29 131.7 195 37.4
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 5.0e-28 128.6 82 73.2
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 1.1e-27 127.5 82 73.2
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.4e-27 127.1 125 54.4
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.4e-27 127.1 85 69.4
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 4.2e-27 125.6 195 37.9
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.7e-26 122.9 149 42.3
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 7.9e-26 121.3 82 70.7
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.4e-25 120.6 86 62.8
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 6.3e-23 111.7 121 50.4
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 8.2e-23 111.3 152 42.1
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 1.1e-22 110.9 97 62.9
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.8e-22 110.2 65 80.0
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 2.4e-22 109.8 57 84.2
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 8.0e-18 94.7 153 35.9
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 5.7e-16 88.6 72 50.0
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 9.1e-14 81.3 50 78.0
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 1.6e-13 80.5 46 82.6
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 2.7e-13 79.7 91 45.1
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 7.7e-13 78.2 47 68.1
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 2.2e-12 76.6 48 81.2
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.1e-11 74.3 146 30.8
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 1.9e-11 73.6 47 63.8
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 1.2e-10 70.9 51 72.5
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 3.6e-10 69.3 46 58.7
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 6.1e-10 68.6 76 53.9
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 7.0e-06 55.1 32 84.4


User provided reference genes

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