Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32075H Brassica oleracea HOM05D000003 ORTHO05D000004 1.2e-20 102.1 46 100.0
BraA09t37715Z Brassica rapa HOM05D000003 ORTHO05D000004 1.9e-13 78.2 44 75.0
BolC7t42817H Brassica oleracea HOM05D000003 ORTHO05D000004 4.1e-13 77.0 45 71.1
BcaC09g48324 Brassica carinata HOM05D000003 ORTHO05D000004 2.7e-12 74.3 45 71.1
BcaB06g26282 Brassica carinata HOM05D000003 ORTHO05D000004 4.6e-12 73.6 45 64.4
BcaC05g25416 Brassica carinata HOM05D000003 ORTHO05D000004 6.0e-12 73.2 45 68.9
BcaC06g35181 Brassica carinata HOM05D000003 ORTHO05D000004 6.0e-12 73.2 45 68.9
BcaC09g48852 Brassica carinata HOM05D000003 ORTHO05D001498 6.0e-12 73.2 45 68.9
BcaC01g04220 Brassica carinata HOM05D000003 ORTHO05D000004 7.8e-12 72.8 44 68.2
ATMG00310 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 6.6e-11 69.7 45 66.7
BcaC01g02801 Brassica carinata HOM05D000003 ORTHO05D000004 6.6e-11 69.7 45 64.4
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 6.6e-11 69.7 43 58.1
BolC3t15816H Brassica oleracea HOM05D000003 ORTHO05D000004 1.1e-10 68.9 44 63.6
BcaC03g18247 Brassica carinata HOM05D000003 ORTHO05D000004 4.7e-09 63.5 45 55.6
BcaC02g08472 Brassica carinata HOM05D000003 ORTHO05D000004 6.2e-09 63.2 32 78.1
BolC7t41443H Brassica oleracea HOM05D000003 ORTHO05D000004 2.4e-08 61.2 45 57.8
BraA08t32705Z Brassica rapa HOM05D000003 ORTHO05D000004 2.4e-08 61.2 45 57.8
BcaB04g17941 Brassica carinata HOM05D000003 ORTHO05D000004 4.0e-08 60.5 45 53.3
BcaC09g51035 Brassica carinata HOM05D000003 ORTHO05D000004 6.8e-08 59.7 44 54.5
Aa31LG2G18130 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.9e-08 59.3 45 53.3
BcaC05g28118 Brassica carinata HOM05D000003 ORTHO05D000004 8.9e-08 59.3 44 54.5
BcaB07g33613 Brassica carinata HOM05D000003 ORTHO05D000004 1.5e-07 58.5 41 56.1
QL01p046318 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-07 58.5 45 40.0
QL05p012799 Quercus lobata HOM05D000003 ORTHO05D000004 2.6e-07 57.8 45 48.9
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-07 57.0 44 45.5
CANSAT25G2643 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-07 57.0 45 46.7
TPR.G27707 Trifolium pratense HOM05D000003 ORTHO05D000004 4.4e-07 57.0 45 44.4
Atru.chr2.2355 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-07 56.6 44 45.5
BcaB05g23696 Brassica carinata HOM05D000003 ORTHO05D001498 5.8e-07 56.6 32 75.0
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 7.6e-07 56.2 44 52.3
Atru.chr11.401 Acer truncatum HOM05D000003 ORTHO05D000004 9.9e-07 55.8 44 50.0
Atru.chr11.973 Acer truncatum HOM05D000003 ORTHO05D000004 9.9e-07 55.8 44 45.5
BcaC06g30787 Brassica carinata HOM05D000003 ORTHO05D000004 9.9e-07 55.8 44 47.7
QL09p031928 Quercus lobata HOM05D000003 ORTHO05D000004 9.9e-07 55.8 44 45.5
Atru.chr6.65 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 55.5 45 48.9
Atru.chr7.663 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 55.5 44 43.2
Aqoxy1G02620 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.3e-06 55.5 44 40.9
CANSAT56G1157 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-06 55.5 45 46.7
QL05p062712 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-06 55.5 45 37.8
Aa31LG1G9570 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.7e-06 55.1 45 44.4
QL03p025076 Quercus lobata HOM05D000003 ORTHO05D000004 1.7e-06 55.1 44 45.5
Aa31LG10G9400 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.2e-06 54.7 45 48.9
Aa31LG3G5890 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.2e-06 54.7 44 45.5
Aa31sc360G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.2e-06 54.7 45 48.9
TPR.G13108 Trifolium pratense HOM05D000003 ORTHO05D000004 2.9e-06 54.3 44 43.2
Aa31LG8G12700 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.8e-06 53.9 45 48.9
QL05p083592 Quercus lobata HOM05D000003 ORTHO05D000004 3.8e-06 53.9 44 38.6
QL05p083724 Quercus lobata HOM05D000003 ORTHO05D000004 3.8e-06 53.9 44 38.6
QL08p015792 Quercus lobata HOM05D000003 ORTHO05D000004 3.8e-06 53.9 44 40.9
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 3.8e-06 53.9 45 46.7
Atru.chr13.1500 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 53.5 44 43.2
Aa31LG3G5010 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.9e-06 53.5 45 44.4
Aa31LG8G11190 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.9e-06 53.5 45 51.1
Aa31sc56G70 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.9e-06 53.5 45 48.9
Aa31sc594G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.9e-06 53.5 45 48.9
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 4.9e-06 53.5 44 47.7
TPR.G29120 Trifolium pratense HOM05D000003 ORTHO05D000004 4.9e-06 53.5 45 44.4
Aa31sc129G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.4e-06 53.1 44 50.0
Aa31sc759G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.4e-06 53.1 45 42.2
CANSAT80G1067 Cannabis sativa HOM05D000003 ORTHO05D000004 6.4e-06 53.1 45 44.4
Os01g0714225 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000004 6.4e-06 53.1 44 47.7
QL05p014002 Quercus lobata HOM05D000003 ORTHO05D000004 6.4e-06 53.1 45 37.8
TPR.G22130 Trifolium pratense HOM05D000003 ORTHO05D000004 6.4e-06 53.1 45 42.2
Atru.chr6.1843 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-06 52.8 41 46.3
Aa31LG11G8400 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.4e-06 52.8 44 45.5
Aa31LG3G5250 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.4e-06 52.8 45 46.7
Aa31sc85G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.4e-06 52.8 44 47.7
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 8.4e-06 52.8 44 47.7


User provided reference genes

Program Settings