Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-56 221.9 120 100.0
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-56 221.9 120 100.0
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 2.7e-56 221.9 120 100.0
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.4e-52 209.5 120 95.0
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 5.3e-52 207.6 120 93.3
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 5.3e-52 207.6 120 93.3
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-39 165.2 120 79.2
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 2.5e-33 145.6 120 70.0
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 5.5e-33 144.4 120 70.8
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.6e-32 142.9 120 70.8
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 2.1e-32 142.5 120 70.0
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 2.1e-32 142.5 120 70.0
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 2.1e-32 142.5 120 70.0
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 8.0e-32 140.6 121 70.2
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.8e-31 139.4 125 68.8
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.3e-31 139.0 120 68.3
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.3e-29 133.3 123 69.1
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 6.5e-26 120.9 106 68.9
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-25 119.8 120 63.3
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 1.5e-25 119.8 120 63.3
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.5e-25 119.8 122 65.6
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 4.2e-25 118.2 120 62.5
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.8e-20 102.8 65 78.5
BraA08t32331Z Brassica rapa HOM05D003595 ORTHO05D004132 5.9e-19 97.8 119 52.9
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 2.5e-17 92.4 53 79.2
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 9.4e-17 90.5 53 77.4
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.1e-16 89.4 71 67.6
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 6.1e-16 87.8 94 57.4
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 6.1e-16 87.8 94 57.4
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 6.1e-16 87.8 94 57.4
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 6.1e-16 87.8 94 57.4
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.0e-15 87.0 110 50.9
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.4e-15 86.7 108 50.0
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.8e-15 86.3 54 74.1
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 4.0e-15 85.1 131 45.0
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 5.2e-15 84.7 54 72.2
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 5.2e-15 84.7 50 74.0
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 5.2e-15 84.7 127 48.0
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 8.8e-15 84.0 118 44.1
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 8.8e-15 84.0 106 48.1
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 8.8e-15 84.0 118 44.9
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-14 83.6 106 47.2
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-14 83.2 54 70.4
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 2.0e-14 82.8 53 71.7
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 3.4e-14 82.0 50 76.0
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.4e-14 82.0 50 76.0
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 4.4e-14 81.6 119 47.1
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 4.4e-14 81.6 116 44.0
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 2.8e-13 79.0 123 44.7
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 6.3e-13 77.8 102 45.1
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.3e-13 77.8 121 42.1
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 6.3e-13 77.8 120 44.2
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.3e-13 77.8 123 43.9
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 8.3e-13 77.4 112 42.9
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-12 77.0 109 45.9
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 2.4e-12 75.9 71 59.2
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 2.4e-12 75.9 57 61.4
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.1e-12 75.1 113 41.6
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.1e-12 75.1 113 41.6
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.1e-12 75.1 113 41.6
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 9.1e-12 73.9 54 61.1
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.2e-11 73.6 121 41.3
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.2e-11 73.6 102 47.1
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.2e-11 73.6 130 38.5
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.2e-11 73.6 108 43.5
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.6e-11 73.2 118 41.5
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.6e-11 73.2 54 59.3
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.7e-11 72.4 115 45.2
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 2.7e-11 72.4 61 57.4
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 2.7e-11 72.4 61 55.7
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 2.7e-11 72.4 105 43.8
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 3.5e-11 72.0 55 60.0
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 3.5e-11 72.0 102 41.2
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.5e-11 71.6 115 39.1
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 5.9e-11 71.2 56 62.5
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.7e-11 70.9 124 38.7
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.0e-10 70.5 115 42.6
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 1.0e-10 70.5 116 41.4
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.0e-10 70.5 120 43.3
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.3e-10 70.1 86 46.5
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.3e-10 70.1 102 42.2
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 1.3e-10 70.1 103 41.7
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.3e-10 70.1 81 45.7
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.3e-10 70.1 113 39.8
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.3e-10 70.1 81 45.7
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.7e-10 69.7 55 60.0
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.7e-10 69.7 115 40.9
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.3e-10 69.3 59 55.9
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.3e-10 69.3 116 38.8
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 2.3e-10 69.3 118 44.1
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.9e-10 68.9 56 58.9
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 3.8e-10 68.6 82 46.3
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.8e-10 68.6 55 52.7
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.0e-10 68.2 117 41.0
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.0e-10 68.2 117 41.0
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 5.0e-10 68.2 126 34.9
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 5.0e-10 68.2 93 41.9
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 5.0e-10 68.2 130 37.7
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 6.6e-10 67.8 55 56.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 6.6e-10 67.8 57 57.9
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 8.6e-10 67.4 105 42.9
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 8.6e-10 67.4 108 39.8
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 8.6e-10 67.4 61 54.1
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 8.6e-10 67.4 107 38.3
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 8.6e-10 67.4 120 40.0
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 8.6e-10 67.4 55 54.5
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-09 67.0 108 44.4
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 1.5e-09 66.6 120 40.8
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.5e-09 66.6 87 43.7
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 1.5e-09 66.6 116 38.8
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.5e-09 66.6 55 52.7
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.5e-09 66.6 95 43.2
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.9e-09 66.2 97 41.2
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 2.5e-09 65.9 55 52.7
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.5e-09 65.9 57 54.4
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 3.3e-09 65.5 110 40.0
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.2e-09 65.1 56 51.8
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 4.2e-09 65.1 105 39.0
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 4.2e-09 65.1 81 45.7
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 5.5e-09 64.7 56 51.8
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.5e-09 64.7 78 43.6
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 7.2e-09 64.3 61 50.8
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 7.2e-09 64.3 85 45.9
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.2e-09 64.3 109 37.6
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 7.2e-09 64.3 121 34.7
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 7.2e-09 64.3 96 42.7
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 9.5e-09 63.9 79 49.4
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 9.5e-09 63.9 95 43.2
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 9.5e-09 63.9 64 53.1
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 9.5e-09 63.9 95 43.2
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 9.5e-09 63.9 96 42.7
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.2e-08 63.5 91 39.6
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.2e-08 63.5 79 49.4
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.2e-08 63.5 109 41.3
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.6e-08 63.2 79 49.4
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 1.6e-08 63.2 55 58.2
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.1e-08 62.8 109 38.5
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 2.1e-08 62.8 108 41.7
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 2.1e-08 62.8 108 37.0
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 2.8e-08 62.4 64 45.3
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 2.8e-08 62.4 131 40.5
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 2.8e-08 62.4 109 38.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.6e-08 62.0 48 62.5
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 4.7e-08 61.6 50 56.0
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 4.7e-08 61.6 112 34.8
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.7e-08 61.6 58 51.7
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 8.0e-08 60.8 52 55.8
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 8.0e-08 60.8 52 55.8
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.0e-07 60.5 54 53.7
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.4e-07 60.1 108 42.6
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.4e-07 60.1 104 44.2
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 1.4e-07 60.1 92 41.3
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.8e-07 59.7 65 49.2
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 2.3e-07 59.3 56 48.2
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.3e-07 59.3 102 39.2
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 3.0e-07 58.9 105 35.2
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 4.0e-07 58.5 55 49.1
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 4.0e-07 58.5 112 39.3
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.2e-07 58.2 52 53.8
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.2e-07 58.2 48 60.4
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 5.2e-07 58.2 49 51.0
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 6.8e-07 57.8 102 35.3
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 8.9e-07 57.4 59 47.5
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 1.2e-06 57.0 50 52.0
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.2e-06 57.0 72 43.1
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.5e-06 56.6 120 39.2
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.4e-06 55.5 59 47.5
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.4e-06 55.5 59 47.5
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 3.4e-06 55.5 56 48.2
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.4e-06 55.1 103 37.9
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.4e-06 55.1 103 37.9
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 5.7e-06 54.7 62 51.6
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 5.7e-06 54.7 84 35.7
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 5.7e-06 54.7 59 44.1
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.8e-06 53.9 122 39.3
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 9.8e-06 53.9 122 39.3
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 9.8e-06 53.9 120 36.7


User provided reference genes

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