Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 1.6e-54 216.1 131 100.0
C05p32030 Brassica napus HOM05D007324 ORTHO05D007884 6.8e-53 210.7 131 98.5
C05p32110 Brassica napus HOM05D007324 ORTHO05D007884 7.6e-44 180.6 131 79.4
BolC5t31940H Brassica oleracea HOM05D007324 ORTHO05D007884 7.6e-44 180.6 131 79.4
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 1.8e-37 159.5 115 78.3
A09p33650 Brassica napus HOM05D007324 ORTHO05D007884 4.2e-34 148.3 135 77.8
BcaB07g32955 Brassica carinata HOM05D007324 ORTHO05D007884 6.0e-33 144.4 115 73.9
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 1.8e-29 132.9 114 67.5
BcaC05g27297 Brassica carinata HOM05D007324 ORTHO05D007884 9.0e-29 130.6 131 74.0
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 2.2e-27 125.9 114 64.9
Sp1g28340 Schrenkiella parvula HOM05D007324 ORTHO05D007884 2.2e-27 125.9 135 71.1
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 1.4e-26 123.2 100 70.0
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 1.4e-26 123.2 100 70.0
Aa31LG2G13400 Aethionema arabicum HOM05D007324 ORTHO05D007884 6.9e-21 104.4 115 61.7
AL1G48030 Arabidopsis lyrata HOM05D007324 ORTHO05D007884 3.5e-17 92.0 105 58.1
CARHR032010 Cardamine hirsuta HOM05D007324 ORTHO05D007884 5.1e-16 88.2 116 51.7
AL1G46810 Arabidopsis lyrata HOM05D007324 ORTHO05D007884 2.5e-15 85.9 115 50.4
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 3.7e-14 82.0 110 57.3
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 1.8e-13 79.7 95 58.9
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 5.3e-13 78.2 119 49.6
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 1.5e-12 76.6 103 56.3
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 3.4e-12 75.5 84 56.0
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 4.5e-12 75.1 100 56.0
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 1.7e-11 73.2 113 46.0
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 2.2e-11 72.8 90 56.7
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 2.9e-11 72.4 115 47.8
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 3.8e-11 72.0 99 51.5
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 5.0e-11 71.6 114 50.9
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 1.1e-10 70.5 90 54.4
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 1.1e-10 70.5 90 54.4
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 1.4e-10 70.1 79 59.5
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 1.4e-10 70.1 90 55.6
CARHR129450 Cardamine hirsuta HOM05D011082 ORTHO05D007884 1.9e-10 69.7 87 51.7
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 2.5e-10 69.3 100 48.0
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 4.2e-10 68.6 117 47.0
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 4.2e-10 68.6 121 44.6
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 5.5e-10 68.2 115 46.1
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 9.3e-10 67.4 89 50.6
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 1.6e-09 66.6 74 59.5
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 1.6e-09 66.6 100 47.0
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 2.1e-09 66.2 100 47.0
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 2.7e-09 65.9 120 47.5
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 2.7e-09 65.9 122 46.7
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 2.7e-09 65.9 75 58.7
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 3.5e-09 65.5 112 50.0
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 3.5e-09 65.5 103 48.5
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 6.1e-09 64.7 117 43.6
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 7.9e-09 64.3 87 51.7
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 7.9e-09 64.3 95 48.4
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 1.0e-08 63.9 145 39.3
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 1.0e-08 63.9 114 43.9
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 1.8e-08 63.2 84 46.4
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 2.3e-08 62.8 98 45.9
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 3.9e-08 62.0 109 41.3
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 6.7e-08 61.2 109 40.4
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 8.7e-08 60.8 77 51.9
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 8.7e-08 60.8 107 43.9
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 1.5e-07 60.1 95 47.4
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 2.5e-07 59.3 102 46.1
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 2.5e-07 59.3 97 43.3
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 9.7e-07 57.4 85 51.8
SalBow1G4617 Salvia bowleyana HOM05D007324 ORTHO05D007884 2.2e-06 56.2 114 42.1
SalBow8G4924 Salvia bowleyana HOM05D007324 ORTHO05D007884 2.2e-06 56.2 114 42.1
FvH4_5g21830 Fragaria vesca HOM05D007324 ORTHO05D007884 2.8e-06 55.8 79 51.9
ClCG10G001740 Citrullus lanatus HOM05D007324 ORTHO05D007884 6.3e-06 54.7 87 48.3
DCAR_005623 Daucus carota HOM05D007324 ORTHO05D007884 6.3e-06 54.7 98 46.9
Nn6g33613 Nelumbo nucifera HOM05D007324 ORTHO05D007884 6.3e-06 54.7 113 41.6
Psat4g078840 Pisum sativum HOM05D007324 ORTHO05D007884 6.3e-06 54.7 88 47.7
AT2G35300 Arabidopsis thaliana HOM05D011082 ORTHO05D007884 8.2e-06 54.3 87 43.7
Manes.15G168800 Manihot esculenta HOM05D007324 ORTHO05D007884 8.2e-06 54.3 74 52.7


User provided reference genes

Program Settings