Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 1.1e-58 229.9 129 100.0
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 1.1e-58 229.9 129 100.0
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 4.1e-58 228.0 129 99.2
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 4.1e-58 228.0 129 99.2
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 1.5e-57 226.1 129 97.7
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 1.8e-53 212.6 119 100.0
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 5.3e-50 201.1 132 88.6
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 7.0e-50 200.7 132 88.6
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 2.6e-49 198.7 124 90.3
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 2.9e-48 195.3 128 86.7
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 1.9e-47 192.6 122 88.5
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 1.2e-46 189.9 121 88.4
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 9.7e-44 180.3 129 81.4
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 2.4e-42 175.6 121 81.8
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.6e-41 172.9 129 78.3
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 3.8e-32 141.7 123 68.3
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 1.2e-28 130.2 132 67.4
BcaC05g27873 Brassica carinata HOM05D006869 ORTHO05D008641 5.7e-28 127.9 114 74.6
C05p38760 Brassica napus HOM05D006869 ORTHO05D008641 5.7e-28 127.9 114 74.6
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 5.7e-28 127.9 113 67.3
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 9.8e-28 127.1 114 64.9
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 1.3e-27 126.7 116 63.8
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 1.7e-27 126.3 114 63.2
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 2.2e-27 125.9 130 59.2
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 2.8e-27 125.6 116 63.8
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 3.7e-27 125.2 116 62.1
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 3.7e-27 125.2 115 64.3
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 4.9e-27 124.8 101 70.3
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 4.9e-27 124.8 101 70.3
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 6.3e-27 124.4 112 65.2
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 1.4e-26 123.2 114 64.0
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 1.8e-26 122.9 111 64.9
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 2.4e-26 122.5 118 61.9
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 2.4e-26 122.5 103 67.0
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 2.4e-26 122.5 121 62.8
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 5.4e-26 121.3 103 68.0
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 5.4e-26 121.3 103 68.0
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 5.4e-26 121.3 108 64.8
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 5.4e-26 121.3 111 64.9
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 4.5e-25 118.2 103 66.0
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 5.9e-25 117.9 97 71.1
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 7.8e-25 117.5 110 62.7
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 1.0e-24 117.1 122 59.8
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 1.3e-24 116.7 133 56.4
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 1.3e-24 116.7 117 59.8
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 1.3e-24 116.7 97 68.0
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 1.7e-24 116.3 99 66.7
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 2.3e-24 115.9 115 60.0
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 2.3e-24 115.9 103 66.0
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 2.3e-24 115.9 111 63.1
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 2.9e-24 115.5 105 63.8
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 6.6e-24 114.4 112 59.8
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 8.6e-24 114.0 122 59.0
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 1.1e-23 113.6 119 58.0
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 1.5e-23 113.2 126 56.3
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 1.9e-23 112.8 117 59.0
BolC5t32616H Brassica oleracea HOM05D006869 ORTHO05D008641 2.5e-23 112.5 81 85.2
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 3.3e-23 112.1 102 60.8
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 4.3e-23 111.7 126 53.2
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 5.6e-23 111.3 105 64.8
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 9.5e-23 110.5 98 67.3
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 9.5e-23 110.5 105 63.8
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 1.2e-22 110.2 130 53.8
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 1.2e-22 110.2 113 59.3
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 1.6e-22 109.8 119 58.0
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 1.6e-22 109.8 104 62.5
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 2.1e-22 109.4 113 60.2
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 2.8e-22 109.0 96 63.5
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.8e-22 109.0 124 56.5
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 2.8e-22 109.0 95 65.3
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 3.6e-22 108.6 120 56.7
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 3.6e-22 108.6 125 56.0
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 3.6e-22 108.6 105 61.9
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 8.0e-22 107.5 105 61.0
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 1.0e-21 107.1 125 55.2
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 1.8e-21 106.3 130 52.3
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 2.3e-21 105.9 104 58.7
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 2.3e-21 105.9 116 55.2
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 4.0e-21 105.1 146 49.3
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 6.8e-21 104.4 104 56.7
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 1.5e-20 103.2 116 54.3
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 2.6e-20 102.4 97 61.9
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 3.4e-20 102.1 99 58.6
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 2.2e-19 99.4 112 53.6
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 1.4e-18 96.7 134 48.5
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 2.4e-18 95.9 111 55.9
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 2.4e-18 95.9 152 46.7
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 9.2e-18 94.0 87 64.4
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 1.7e-16 89.7 149 43.6
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 2.5e-15 85.9 106 50.9
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 1.2e-14 83.6 98 53.1
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 1.6e-14 83.2 92 54.3
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 3.6e-14 82.0 80 60.0
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 1.1e-13 80.5 75 61.3
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 1.1e-13 80.5 72 62.5
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 1.8e-13 79.7 76 60.5
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 2.3e-13 79.3 74 59.5
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 3.1e-13 79.0 86 54.7
Psat1g009440 Pisum sativum HOM05D006869 ORTHO05D008641 1.2e-12 77.0 66 71.2
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 2.0e-12 76.3 85 54.1
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 2.2e-11 72.8 65 61.5
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 2.4e-10 69.3 86 45.3
Mapoly0009s0146 Marchantia polymorpha HOM05D006869 ORTHO05D008641 4.1e-10 68.6 106 39.6
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 7.0e-10 67.8 74 54.1
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 7.0e-10 67.8 68 51.5
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 9.2e-10 67.4 70 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 1.9e-07 59.7 94 39.4
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 4.3e-07 58.5 42 73.8
Zm00001eb390630 Zea mays HOM05D006869 ORTHO05D008641 4.3e-07 58.5 49 69.4
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 1.2e-06 57.0 41 70.7
Sed0003750 Sechium edule HOM05D006869 ORTHO05D008641 2.8e-06 55.8 53 64.2
vmacro23515 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 4.7e-06 55.1 46 65.2
PGR142G3578 Punica granatum HOM05D006869 ORTHO05D008641 8.1e-06 54.3 51 54.9


User provided reference genes

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