Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p30020 Brassica napus HOM05D007073 ORTHO05D008855 4.7e-46 187.6 99 100.0
BolC5t31739H Brassica oleracea HOM05D007073 ORTHO05D008855 4.7e-46 187.6 99 100.0
BcaC05g27117 Brassica carinata HOM05D007073 ORTHO05D008855 8.0e-22 107.1 70 81.4
BcaC05g27119 Brassica carinata HOM05D007073 ORTHO05D008855 8.0e-22 107.1 70 81.4
A09p35370 Brassica napus HOM05D007073 ORTHO05D008855 8.0e-22 107.1 70 81.4
C05p29970 Brassica napus HOM05D007073 ORTHO05D008855 8.0e-22 107.1 70 81.4
BolC5t31732H Brassica oleracea HOM05D007073 ORTHO05D008855 8.0e-22 107.1 70 81.4
BolC5t31736H Brassica oleracea HOM05D007073 ORTHO05D008855 8.0e-22 107.1 70 81.4
BcaB07g32745 Brassica carinata HOM05D007073 ORTHO05D008855 1.4e-21 106.3 73 78.1
Thhalv10009135m.g Eutrema salsugineum HOM05D007073 ORTHO05D008855 5.8e-20 100.9 70 78.6
Sp1g26740 Schrenkiella parvula HOM05D007073 ORTHO05D008855 5.8e-20 100.9 70 78.6
CARHR030330 Cardamine hirsuta HOM05D007073 ORTHO05D008855 7.5e-20 100.5 70 77.1
AL1G45120 Arabidopsis lyrata HOM05D007073 ORTHO05D008855 2.9e-19 98.6 93 63.4
Aa31LG6G9870 Aethionema arabicum HOM05D007073 ORTHO05D008855 3.7e-19 98.2 70 72.9
Carub.0001s2918 Capsella rubella HOM05D007073 ORTHO05D008855 4.9e-19 97.8 70 74.3
AT1G30845 Arabidopsis thaliana HOM05D007073 ORTHO05D008855 6.4e-19 97.4 70 75.7
Ca_17949_v3 Cicer arietinum L. HOM05D007073 ORTHO05D008855 5.4e-18 94.4 70 67.1
Psat7g072280 Pisum sativum HOM05D007073 ORTHO05D008855 1.6e-17 92.8 70 65.7
Glyma.08G113800 Glycine max HOM05D007073 ORTHO05D008855 4.6e-17 91.3 70 65.7
TPR.G24371 Trifolium pratense HOM05D007073 ORTHO05D008855 6.0e-17 90.9 70 65.7
Potri.005G235800 Populus trichocarpa HOM05D007073 ORTHO05D008855 2.3e-16 89.0 69 68.1
Sabra05G0182000 Salix brachista HOM05D007073 ORTHO05D008855 2.3e-16 89.0 69 68.1
THA.LOC104810648 Tarenaya hassleriana HOM05D007073 ORTHO05D008855 2.3e-16 89.0 70 68.6
arahy.Tifrunner.gnm1.ann1.0LW32C Arachis hypogaea HOM05D007073 ORTHO05D008855 3.0e-16 88.6 68 69.1
arahy.Tifrunner.gnm1.ann1.F1G2D9 Arachis hypogaea HOM05D007073 ORTHO05D008855 3.0e-16 88.6 68 69.1
Glyma.05G155900 Glycine max HOM05D007073 ORTHO05D008855 6.6e-16 87.4 67 67.2
Nn5g29254 Nelumbo nucifera HOM05D007073 ORTHO05D008855 6.6e-16 87.4 70 65.7
C05p29960 Brassica napus HOM05D007073 ORTHO05D008855 8.6e-16 87.0 56 80.4
Lj4g0003370 Lotus japonicus HOM05D007073 ORTHO05D008855 8.6e-16 87.0 70 64.3
SGA_v2.0_scaffold92G28274 Striga asiatica HOM05D007073 ORTHO05D008855 8.6e-16 87.0 67 65.7
Migut.C00802 Erythranthe guttata HOM05D007073 ORTHO05D008855 1.9e-15 85.9 70 62.9
Medtr8g085700 Medicago truncatula HOM05D007073 ORTHO05D008855 1.9e-15 85.9 70 61.4
CDE08G0828 Ceratophyllum demersum HOM05D007073 ORTHO05D008855 2.5e-15 85.5 67 64.2
Manes.18G016450 Manihot esculenta HOM05D007073 ORTHO05D008855 2.5e-15 85.5 67 70.1
RhsimUnG0148500 Rhododendron simsii HOM05D007073 ORTHO05D008855 2.5e-15 85.5 70 65.7
GSVIVG01009840001 Vitis vinifera HOM05D007073 ORTHO05D008855 2.5e-15 85.5 70 64.3
CSS0049768 Camellia sinensis var. sinensis HOM05D007073 ORTHO05D008855 3.3e-15 85.1 70 62.9
Haze_22602 Corylus avellana HOM05D000624 ORTHO05D000495 3.3e-15 85.1 67 64.2
Eucgr.H01037 Eucalyptus grandis HOM05D007073 ORTHO05D008855 3.3e-15 85.1 67 67.2
Eucgr.H01040 Eucalyptus grandis HOM05D007073 ORTHO05D008855 3.3e-15 85.1 67 67.2
Eucgr.L01253 Eucalyptus grandis HOM05D007073 ORTHO05D008855 3.3e-15 85.1 67 67.2
COL.COLO4_26179 Corchorus olitorius HOM05D007073 ORTHO05D008855 4.3e-15 84.7 67 64.2
QL02p010904 Quercus lobata HOM05D007073 ORTHO05D008855 4.3e-15 84.7 70 64.3
unitig_32.g11146 Utricularia gibba HOM05D007073 ORTHO05D008855 4.3e-15 84.7 70 61.4
AUR62019145 Chenopodium quinoa HOM05D007073 ORTHO05D008855 5.6e-15 84.3 70 62.9
Phvul.002G236200 Phaseolus vulgaris HOM05D007073 ORTHO05D008855 5.6e-15 84.3 70 62.9
RcHm_v2.0_Chr6g0302381 Rosa chinensis HOM05D007073 ORTHO05D008855 5.6e-15 84.3 67 62.7
Solyc04g081160.3 Solanum lycopersicum HOM05D007073 ORTHO05D008855 5.6e-15 84.3 67 64.2
Sopen04g034780 Solanum pennellii HOM05D007073 ORTHO05D008855 5.6e-15 84.3 67 64.2
PGSC0003DMG400003718 Solanum tuberosum HOM05D007073 ORTHO05D008855 5.6e-15 84.3 67 64.2
TAR628G0116 Trochodendron aralioides HOM05D007073 ORTHO05D008855 5.6e-15 84.3 70 61.4
VMungo0251G2135 Vigna mungo HOM05D007073 ORTHO05D008855 5.6e-15 84.3 70 62.9
Dinv31819 Davidia involucrata HOM05D007073 ORTHO05D008855 7.3e-15 84.0 67 65.7
Peaxi162Scf00287g01620 Petunia axillaris HOM05D007073 ORTHO05D008855 9.5e-15 83.6 67 62.7
Hma1.2p1_0773F.1_g216240 Hydrangea macrophylla HOM05D007073 ORTHO05D008855 1.2e-14 83.2 67 62.7
RcHm_v2.0_Chr6g0272121 Rosa chinensis HOM05D007073 ORTHO05D008855 1.6e-14 82.8 67 62.7
CAN.G1271.5 Capsicum annuum HOM05D007073 ORTHO05D008855 2.1e-14 82.4 67 64.2
HanXRQChr02g0044001 Helianthus annuus HOM05D007073 ORTHO05D008855 2.1e-14 82.4 67 65.7
SalBow7G2056 Salvia bowleyana HOM05D007073 ORTHO05D008855 2.1e-14 82.4 67 59.7
FvH4_5g30190 Fragaria vesca HOM05D007073 ORTHO05D008855 2.8e-14 82.0 67 64.2
Lsat_1_v5_gn_1_16141 Lactuca sativa HOM05D007073 ORTHO05D008855 2.8e-14 82.0 69 62.3
Atru.chr13.338 Acer truncatum HOM05D007073 ORTHO05D008855 3.6e-14 81.6 70 58.6
EL10Ac1g00450 Beta vulgaris HOM05D007073 ORTHO05D008855 3.6e-14 81.6 67 64.2
ClCG08G014440 Citrullus lanatus HOM05D007073 ORTHO05D008855 3.6e-14 81.6 69 63.8
PGR031G0624 Punica granatum HOM05D007073 ORTHO05D008855 3.6e-14 81.6 67 64.2
Sed0011824 Sechium edule HOM05D007073 ORTHO05D008855 3.6e-14 81.6 69 63.8
SGA_v2.0_scaffold92G28275 Striga asiatica HOM05D007073 ORTHO05D008855 3.6e-14 81.6 67 64.2
vmacro21707 Vaccinium macrocarpon HOM05D007073 ORTHO05D008855 3.6e-14 81.6 67 65.7
CANSAT25G0010 Cannabis sativa HOM05D007073 ORTHO05D008855 4.7e-14 81.3 66 62.1
CsaV3_2G029360 Cucumis sativus L. HOM05D007073 ORTHO05D008855 4.7e-14 81.3 69 63.8
Oeu054729.1 Olea europaea HOM05D007073 ORTHO05D008855 6.2e-14 80.9 67 61.2
PSO541G6379 Papaver somniferum HOM05D007073 ORTHO05D008855 6.2e-14 80.9 69 63.8
PSO675G5408 Papaver somniferum HOM05D007073 ORTHO05D008855 6.2e-14 80.9 69 63.8
Duzib093G1738 Durio zibethinus HOM05D007073 ORTHO05D008855 1.4e-13 79.7 67 62.7
ECA247G1834 Erigeron canadensis HOM05D007073 ORTHO05D008855 1.4e-13 79.7 67 62.7
Lalb_Chr12g0205331 Lupinus albus HOM05D007073 ORTHO05D008855 1.4e-13 79.7 70 58.6
TWI56G0686 Tripterygium wilfordii HOM05D007073 ORTHO05D008855 1.4e-13 79.7 67 58.2
Sc26g0003150 Simmondsia chinensis HOM05D007073 ORTHO05D008855 1.8e-13 79.3 70 58.6
MSTRG.1215 Avicennia marina HOM05D007073 ORTHO05D008855 3.1e-13 78.6 67 59.7
Zm00001eb001980 Zea mays HOM05D007073 ORTHO05D008855 3.1e-13 78.6 67 62.7
Zm00001eb403590 Zea mays HOM05D007073 ORTHO05D008855 8.9e-13 77.0 70 60.0
CANSAT11G0546 Cannabis sativa HOM05D007073 ORTHO05D008855 1.5e-12 76.3 72 59.7
Cc04_g14740 Coffea canephora HOM05D007073 ORTHO05D008855 1.5e-12 76.3 68 58.8
Cc02_g29940 Coffea canephora HOM05D007073 ORTHO05D008855 2.0e-12 75.9 68 58.8
Rhsim06G0025500 Rhododendron simsii HOM05D000624 ORTHO05D000495 2.6e-12 75.5 59 69.5
CANSAT11G2499 Cannabis sativa HOM05D007073 ORTHO05D008855 4.4e-12 74.7 72 58.3
MD08G1016500 Malus domestica HOM05D007073 ORTHO05D008855 5.8e-12 74.3 68 55.9
Actinidia37317 Actinidia chinensis HOM05D007073 ORTHO05D008855 2.2e-11 72.4 68 55.9
HPP92_025607 Vanilla planifolia HOM05D007073 ORTHO05D008855 2.2e-11 72.4 67 58.2
MD15G1015600 Malus domestica HOM05D007073 ORTHO05D008855 4.9e-11 71.2 67 56.7
MD13G1087600 Malus domestica HOM05D007073 ORTHO05D008855 8.3e-11 70.5 74 52.7
ATR0945G003 Amborella trichopoda HOM05D007073 ORTHO05D008855 1.1e-10 70.1 66 56.1
AUR62014408 Chenopodium quinoa HOM05D007073 ORTHO05D008855 1.4e-10 69.7 106 43.4
CiPaw.07G153100 Carya illinoinensis HOM05D007073 ORTHO05D008855 3.2e-10 68.6 42 76.2
Ciclev10002853m.g Citrus clementina HOM05D007073 ORTHO05D008855 3.2e-10 68.6 46 69.6
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 4.1e-10 68.2 53 64.2
Nitab4.5_0005185g0010 Nicotiana tabacum HOM05D007073 ORTHO05D008855 4.1e-10 68.2 43 74.4
Prupe.1G369500 Prunus persica HOM05D007073 ORTHO05D008855 4.1e-10 68.2 74 51.4
Thecc.08G038900 Theobroma cacao HOM05D007073 ORTHO05D008855 4.1e-10 68.2 42 76.2
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 5.4e-10 67.8 42 73.8
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 5.4e-10 67.8 66 56.1
FAN13G2867 Fragaria x ananassa HOM05D007073 ORTHO05D008855 7.1e-10 67.4 42 78.6
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 7.1e-10 67.4 42 78.6
Peaxi162Scf01591g00005 Petunia axillaris HOM05D007073 ORTHO05D008855 7.1e-10 67.4 43 74.4
Os03g0127000 Oryza sativa ssp. japonica HOM05D007073 ORTHO05D008855 1.2e-09 66.6 41 75.6
Gohir.A01G112900 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.6e-09 66.2 42 73.8
Gohir.D01G101000 Gossypium hirsutum HOM05D007073 ORTHO05D008855 1.6e-09 66.2 42 73.8
arahy.Tifrunner.gnm1.ann1.JR36LC Arachis hypogaea HOM05D007073 ORTHO05D008855 2.7e-09 65.5 43 74.4
SEGI_10735 Sequoiadendron giganteum HOM05D007073 ORTHO05D008855 4.6e-09 64.7 71 46.5
MELO3C010995.2 Cucumis melo HOM05D007073 ORTHO05D008855 6.0e-09 64.3 42 73.8
DCAR_017499 Daucus carota HOM05D007073 ORTHO05D008855 3.9e-08 61.6 59 55.9
Eucgr.L01259 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.9e-07 59.3 37 73.0
Pp3c8_14860 Physcomitrium patens HOM05D007073 ORTHO05D008855 7.3e-07 57.4 64 50.0
Actinidia26593 Actinidia chinensis HOM05D007073 ORTHO05D008855 3.6e-06 55.1 48 62.5


User provided reference genes

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