Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 3.9e-176 621.3 306 100.0
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 1.9e-162 575.9 286 99.7
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 5.5e-146 521.2 260 99.6
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 3.9e-115 418.7 261 82.8
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 1.1e-114 417.2 261 82.4
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 1.1e-114 417.2 261 82.4
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 9.2e-101 370.9 257 77.0
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.1e-98 364.0 231 82.7
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 5.2e-96 355.1 261 73.6
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.6e-81 307.0 230 74.3
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 3.6e-81 305.8 222 75.7
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 6.9e-80 301.6 226 75.7
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 5.8e-79 298.5 227 74.0
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 1.4e-77 293.9 240 70.0
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 4.6e-76 288.9 242 66.9
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 2.0e-71 273.5 214 70.1
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 1.8e-67 260.4 215 66.0
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 3.8e-62 242.7 230 57.0
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 2.5e-61 240.0 194 64.9
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.4e-56 223.4 205 60.0
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 6.9e-56 221.9 146 72.6
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 2.6e-55 219.9 171 65.5
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 3.4e-55 219.5 144 74.3
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 3.4e-55 219.5 192 59.4
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.0e-54 218.0 205 58.0
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.7e-54 217.2 188 55.3
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.9e-54 216.5 170 62.9
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 3.8e-54 216.1 171 59.1
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 6.5e-54 215.3 170 62.9
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.4e-53 214.2 190 56.3
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 3.2e-53 213.0 235 52.3
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 4.2e-53 212.6 245 51.0
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 5.5e-53 212.2 206 56.8
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 7.2e-53 211.8 190 61.1
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 7.2e-53 211.8 216 53.2
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.6e-52 210.7 170 61.8
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 1.6e-52 210.7 206 56.3
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 3.6e-52 209.5 205 57.6
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 4.6e-52 209.1 220 54.1
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 6.1e-52 208.8 202 57.4
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 7.9e-52 208.4 193 58.0
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 1.4e-51 207.6 189 60.8
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.8e-51 207.2 147 72.1
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.8e-51 207.2 235 51.9
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 1.8e-51 207.2 207 54.1
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 3.9e-51 206.1 196 56.1
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 6.7e-51 205.3 149 69.8
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.1e-50 204.5 174 62.1
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.5e-50 204.1 146 70.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.5e-50 203.4 234 53.0
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 3.3e-50 203.0 210 54.3
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 3.3e-50 203.0 147 71.4
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 3.3e-50 203.0 199 56.3
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 5.7e-50 202.2 148 68.9
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 7.4e-50 201.8 175 61.1
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 9.7e-50 201.4 190 57.9
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 9.7e-50 201.4 206 56.8
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 9.7e-50 201.4 177 62.1
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 9.7e-50 201.4 163 63.2
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.3e-49 201.1 177 61.0
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 2.2e-49 200.3 231 51.9
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 2.8e-49 199.9 201 54.7
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 3.7e-49 199.5 180 62.2
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 3.7e-49 199.5 204 53.4
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 4.8e-49 199.1 188 56.9
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 1.4e-48 197.6 222 52.7
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 1.8e-48 197.2 238 49.2
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 5.3e-48 195.7 169 59.8
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 2.6e-47 193.4 148 64.9
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 4.5e-47 192.6 175 55.4
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 7.7e-47 191.8 166 62.7
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.3e-46 191.0 161 60.9
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 2.9e-46 189.9 166 62.0
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 3.8e-46 189.5 207 54.6
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 5.0e-46 189.1 227 49.3
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 5.0e-46 189.1 165 61.8
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 8.5e-46 188.3 182 58.8
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 2.5e-45 186.8 204 51.0
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 4.2e-45 186.0 176 54.5
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.2e-45 186.0 130 71.5
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 5.5e-45 185.7 128 72.7
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 7.2e-45 185.3 189 55.0
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 9.4e-45 184.9 168 56.0
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 9.4e-45 184.9 169 60.4
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.6e-44 184.1 130 70.8
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.6e-44 184.1 130 70.8
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 3.6e-44 183.0 199 54.3
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 6.1e-44 182.2 209 51.2
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 1.0e-43 181.4 210 51.0
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 1.8e-43 180.6 130 70.0
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 5.1e-43 179.1 260 45.8
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 8.8e-43 178.3 225 48.0
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 2.6e-42 176.8 116 72.4
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 3.3e-42 176.4 194 50.0
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 3.3e-42 176.4 194 50.0
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 4.4e-42 176.0 150 60.0
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 7.4e-42 175.3 127 67.7
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 4.1e-40 169.5 227 48.0
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 3.5e-39 166.4 114 72.8
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.9e-37 160.6 184 48.9
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 2.6e-34 150.2 130 57.7
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 2.6e-34 150.2 170 50.0
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.3e-33 147.9 197 47.2
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 3.7e-33 146.4 195 45.6
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 3.7e-33 146.4 147 53.1
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 9.1e-32 141.7 109 63.3
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.7e-23 113.6 83 63.9
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 5.9e-23 112.5 148 48.0
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.7e-15 87.0 73 63.0
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 7.7e-15 85.5 123 49.6
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 1.1e-13 81.6 61 63.9
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 8.0e-12 75.5 50 76.0
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 8.0e-12 75.5 50 78.0
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 1.0e-11 75.1 167 29.9
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 1.4e-11 74.7 51 74.5
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 1.8e-11 74.3 123 31.7
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 5.2e-11 72.8 111 42.3
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 2.9e-09 67.0 137 29.9
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 8.3e-09 65.5 122 32.8
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 5.4e-08 62.8 119 32.8
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 7.0e-08 62.4 213 24.9
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 9.2e-08 62.0 138 29.0
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 1.2e-07 61.6 119 26.9
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 1.6e-07 61.2 119 27.7
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 1.6e-07 61.2 213 24.9
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 2.7e-07 60.5 138 29.7
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 4.6e-07 59.7 184 26.1
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 5.9e-07 59.3 138 29.0
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 7.8e-07 58.9 134 29.1
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 1.3e-06 58.2 122 32.0
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 1.3e-06 58.2 118 27.1
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 1.3e-06 58.2 185 28.1
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 1.7e-06 57.8 176 23.9
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 1.7e-06 57.8 119 31.1
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 2.3e-06 57.4 48 64.6
SEGI_13595 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 2.3e-06 57.4 119 31.1
SGA_v2.0_scaffold7G03966 Striga asiatica HOM05D006740 ORTHO05D008571 2.3e-06 57.4 121 27.3
Sabra03G0150000 Salix brachista HOM05D005973 ORTHO05D007285 2.9e-06 57.0 122 30.3
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 3.9e-06 56.6 119 24.4
MD07G1026900 Malus domestica HOM05D005973 ORTHO05D007285 3.9e-06 56.6 122 31.1
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 3.9e-06 56.6 173 27.2
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 5.0e-06 56.2 126 28.6
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 5.0e-06 56.2 119 30.3
MD12G1044100 Malus domestica HOM05D006596 ORTHO05D008497 5.0e-06 56.2 186 24.2
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 5.0e-06 56.2 154 28.6
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 5.0e-06 56.2 88 34.1
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 5.0e-06 56.2 134 29.1
A06p16380 Brassica napus HOM05D000424 ORTHO05D000355 6.6e-06 55.8 102 33.3
Ciclev10030824m.g Citrus clementina HOM05D005973 ORTHO05D007285 6.6e-06 55.8 119 29.4
Lj3g0009247 Lotus japonicus HOM05D007409 ORTHO05D009264 6.6e-06 55.8 138 29.7
Prupe.2G027000 Prunus persica HOM05D005973 ORTHO05D007285 6.6e-06 55.8 122 30.3
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 8.6e-06 55.5 120 31.7
Dinv35763 Davidia involucrata HOM05D006740 ORTHO05D008571 8.6e-06 55.5 121 24.8


User provided reference genes

Program Settings