Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 4.3e-44 181.0 98 100.0
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 4.3e-44 181.0 98 100.0
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 2.2e-43 178.7 98 99.0
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 5.3e-42 174.1 98 98.0
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.3e-40 169.5 99 97.0
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 2.9e-40 168.3 98 94.9
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 1.4e-31 139.4 98 80.6
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 5.5e-31 137.5 98 79.6
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 1.4e-29 132.9 93 81.7
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 1.4e-29 132.9 93 81.7
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 3.9e-29 131.3 93 80.6
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 2.6e-28 128.6 98 77.6
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 6.3e-27 124.0 100 79.0
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 4.1e-26 121.3 98 75.5
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 1.5e-23 112.8 98 71.4
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 8.8e-21 103.6 99 68.7
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 4.8e-19 97.8 98 65.3
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 6.1e-14 80.9 98 55.1
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 6.3e-11 70.9 56 62.5
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 1.1e-10 70.1 52 76.9
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.8e-10 69.3 75 53.3
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 1.8e-10 69.3 55 72.7
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 7.0e-10 67.4 92 48.9
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.2e-09 66.6 59 62.7
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 1.2e-09 66.6 54 63.0
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 2.0e-09 65.9 95 47.4
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 2.0e-09 65.9 51 66.7
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 2.0e-09 65.9 69 59.4
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.7e-09 65.5 98 44.9
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 2.7e-09 65.5 75 53.3
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 2.7e-09 65.5 98 51.0
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.7e-09 65.5 95 45.3
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.5e-09 65.1 57 68.4
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 3.5e-09 65.1 57 68.4
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 3.5e-09 65.1 69 60.9
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.5e-09 65.1 68 57.4
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 4.5e-09 64.7 100 44.0
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 5.9e-09 64.3 78 60.3
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 5.9e-09 64.3 49 65.3
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 7.7e-09 63.9 73 56.2
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 7.7e-09 63.9 98 46.9
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.0e-08 63.5 74 52.7
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 1.0e-08 63.5 74 52.7
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 1.0e-08 63.5 61 57.4
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 1.0e-08 63.5 50 62.0
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.0e-08 63.5 52 61.5
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 1.3e-08 63.2 46 65.2
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 1.3e-08 63.2 50 64.0
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.3e-08 63.2 95 47.4
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 1.7e-08 62.8 82 46.3
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 1.7e-08 62.8 98 44.9
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 1.7e-08 62.8 39 76.9
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 2.2e-08 62.4 75 56.0
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.2e-08 62.4 57 66.7
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.2e-08 62.4 57 66.7
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.2e-08 62.4 65 53.8
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.2e-08 62.4 65 53.8
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 2.9e-08 62.0 76 48.7
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 2.9e-08 62.0 67 49.3
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 2.9e-08 62.0 45 62.2
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.9e-08 62.0 73 52.1
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 5.0e-08 61.2 67 64.2
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 5.0e-08 61.2 45 66.7
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 5.0e-08 61.2 73 50.7
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 5.0e-08 61.2 39 74.4
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.0e-08 61.2 50 60.0
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 6.5e-08 60.8 75 53.3
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 6.5e-08 60.8 73 53.4
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 8.5e-08 60.5 90 48.9
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 8.5e-08 60.5 61 60.7
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 8.5e-08 60.5 48 58.3
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 8.5e-08 60.5 48 58.3
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 8.5e-08 60.5 69 50.7
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 75 53.3
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 1.1e-07 60.1 71 53.5
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 53 54.7
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 1.5e-07 59.7 73 54.8
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 1.5e-07 59.7 69 49.3
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 1.5e-07 59.7 85 51.8
Aa31LG6G3080 Aethionema arabicum HOM05D012071 ORTHO05D013970 1.9e-07 59.3 44 72.7
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 1.9e-07 59.3 42 66.7
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 1.9e-07 59.3 69 47.8
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 1.9e-07 59.3 105 43.8
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 1.9e-07 59.3 53 62.3
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 1.9e-07 59.3 50 68.0
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.9e-07 59.3 56 57.1
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 2.5e-07 58.9 48 56.2
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 2.5e-07 58.9 98 40.8
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 2.5e-07 58.9 87 44.8
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 2.5e-07 58.9 48 58.3
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.2e-07 58.5 90 45.6
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 3.2e-07 58.5 75 48.0
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 4.2e-07 58.2 75 52.0
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 4.2e-07 58.2 61 59.0
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 5.5e-07 57.8 48 54.2
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 5.5e-07 57.8 50 60.0
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 5.5e-07 57.8 73 47.9
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 7.2e-07 57.4 68 47.1
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 9.4e-07 57.0 77 46.8
AT4G21060 Arabidopsis thaliana HOM05D000777 ORTHO05D000595 1.2e-06 56.6 41 75.6
CARHR227630 Cardamine hirsuta HOM05D012071 ORTHO05D013970 1.2e-06 56.6 41 75.6
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 1.2e-06 56.6 48 62.5
BcaC09g51267 Brassica carinata HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
A03p52620 Brassica napus HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
C01p14990 Brassica napus HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
C07p51060 Brassica napus HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
BolC1t01447H Brassica oleracea HOM05D000777 ORTHO05D000595 1.6e-06 56.2 39 79.5
BraA03t14336Z Brassica rapa HOM05D012071 ORTHO05D013970 1.6e-06 56.2 39 79.5
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 1.6e-06 56.2 69 44.9
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.6e-06 56.2 71 53.5
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 1.6e-06 56.2 49 59.2
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.1e-06 55.8 101 43.6
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 2.1e-06 55.8 67 49.3
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 2.7e-06 55.5 41 65.9
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 2.7e-06 55.5 77 44.2
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 2.7e-06 55.5 98 43.9
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 3.6e-06 55.1 38 68.4
BolC7t45606H Brassica oleracea HOM05D012071 ORTHO05D013970 4.7e-06 54.7 38 78.9
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 4.7e-06 54.7 74 50.0
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.7e-06 54.7 57 59.6
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 4.7e-06 54.7 57 59.6
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 4.7e-06 54.7 57 59.6
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 6.1e-06 54.3 76 43.4
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 8.0e-06 53.9 98 35.7


User provided reference genes

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