Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 5.5e-73 277.7 157 100.0
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 5.5e-73 277.7 157 100.0
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 5.5e-73 277.7 157 100.0
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 9.0e-68 260.4 166 92.2
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 9.0e-68 260.4 166 92.2
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 5.7e-62 241.1 167 88.6
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 2.6e-59 232.3 159 87.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 6.5e-58 227.6 159 85.5
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 1.9e-54 216.1 161 83.2
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.2e-53 212.6 165 81.2
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 1.1e-52 210.3 161 80.7
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 2.4e-52 209.1 160 81.9
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 5.3e-52 208.0 167 79.6
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 5.3e-52 208.0 161 80.7
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 5.3e-52 208.0 167 79.6
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 3.4e-51 205.3 159 79.2
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 4.5e-51 204.9 160 79.4
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 4.5e-51 204.9 161 80.1
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 2.2e-50 202.6 160 78.1
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 3.2e-49 198.7 162 79.0
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 3.2e-41 172.2 165 70.9
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.2e-40 170.2 161 68.9
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 7.2e-33 144.4 154 63.0
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 7.2e-33 144.4 161 61.5
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 3.6e-32 142.1 158 62.0
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 6.1e-32 141.4 158 61.4
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.0e-31 140.6 163 58.9
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.0e-31 139.0 158 61.4
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 4.0e-31 138.7 157 62.4
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 4.0e-31 138.7 157 62.4
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.8e-31 137.5 137 66.4
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.2e-30 137.1 138 65.9
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.2e-30 137.1 157 61.8
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.5e-30 136.7 160 63.8
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.0e-30 136.3 138 65.9
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 2.6e-30 136.0 142 66.9
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 2.6e-30 136.0 160 59.4
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 5.7e-30 134.8 160 62.5
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 5.7e-30 134.8 160 59.4
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 7.5e-30 134.4 157 59.9
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 7.5e-30 134.4 148 63.5
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 9.7e-30 134.0 157 60.5
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 1.3e-29 133.7 161 60.2
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.3e-29 133.7 161 59.6
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 1.7e-29 133.3 139 62.6
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.7e-29 133.3 135 66.7
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 4.8e-29 131.7 158 62.0
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 4.8e-29 131.7 149 63.1
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 4.8e-29 131.7 152 59.9
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 6.3e-29 131.3 103 77.7
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 6.3e-29 131.3 160 61.2
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 6.3e-29 131.3 158 62.7
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 6.3e-29 131.3 111 72.1
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.1e-28 130.6 159 61.0
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 1.8e-28 129.8 163 58.9
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 1.8e-28 129.8 153 59.5
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.4e-28 129.4 138 65.2
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 3.1e-28 129.0 131 63.4
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 3.1e-28 129.0 135 65.9
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 4.1e-28 128.6 158 61.4
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 4.1e-28 128.6 154 57.8
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 4.1e-28 128.6 158 62.0
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 5.3e-28 128.3 138 64.5
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 5.3e-28 128.3 138 64.5
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 5.3e-28 128.3 156 59.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 9.1e-28 127.5 142 65.5
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 1.6e-27 126.7 159 57.9
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 2.0e-27 126.3 159 59.1
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 2.7e-27 125.9 164 58.5
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 3.5e-27 125.6 160 58.8
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 7.7e-27 124.4 138 63.8
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 1.3e-26 123.6 133 62.4
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.9e-26 122.5 137 65.0
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 3.8e-26 122.1 157 56.1
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 3.8e-26 122.1 138 62.3
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 5.0e-26 121.7 158 56.3
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 6.5e-26 121.3 201 51.7
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 8.5e-26 120.9 153 57.5
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.9e-25 119.8 163 57.1
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 3.2e-25 119.0 133 62.4
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 4.2e-25 118.6 135 62.2
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 5.5e-25 118.2 132 60.6
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 9.4e-25 117.5 162 56.8
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 9.4e-25 117.5 104 70.2
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 9.4e-25 117.5 104 70.2
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.2e-24 117.1 130 62.3
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 2.1e-24 116.3 154 57.8
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 3.6e-24 115.5 137 58.4
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.8e-23 113.2 76 81.6
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 2.3e-23 112.8 133 60.2
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 2.3e-23 112.8 133 60.2
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 6.8e-23 111.3 153 54.2
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 6.8e-23 111.3 109 65.1
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.5e-22 110.2 151 58.3
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.5e-22 110.2 147 57.1
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 2.0e-22 109.8 163 57.1
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 2.6e-22 109.4 142 57.0
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 5.7e-22 108.2 150 58.0
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 7.5e-22 107.8 106 67.9
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 9.8e-22 107.5 159 53.5
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 9.8e-22 107.5 139 56.8
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.7e-21 106.7 72 79.2
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 3.1e-20 102.4 124 57.3
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 3.1e-20 102.4 87 69.0
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 3.1e-20 102.4 159 56.0
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 4.1e-20 102.1 136 53.7
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 5.4e-20 101.7 155 51.6
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 2.7e-19 99.4 158 51.3
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 4.5e-19 98.6 59 89.8
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 4.5e-19 98.6 73 74.0
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 7.7e-19 97.8 66 81.8
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 7.7e-19 97.8 136 55.1
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 1.3e-18 97.1 94 64.9
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 5.0e-18 95.1 131 56.5
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 1.5e-17 93.6 137 52.6
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 1.5e-17 93.6 99 57.6
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 5.5e-17 91.7 89 61.8
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 5.5e-17 91.7 89 61.8
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 1.8e-15 86.7 114 56.1
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 4.9e-13 78.6 167 41.9
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 7.0e-12 74.7 140 49.3
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 9.2e-12 74.3 98 59.2
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 2.7e-11 72.8 124 49.2
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 3.5e-11 72.4 70 60.0
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 7.8e-11 71.2 135 42.2
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 5.0e-10 68.6 119 47.9
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 2.5e-09 66.2 79 64.6
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 9.5e-09 64.3 157 44.6


User provided reference genes

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