Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 8.4e-171 603.6 303 100.0
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.7e-147 526.2 283 95.1
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 2.9e-147 525.4 283 94.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-140 503.4 280 92.5
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 3.7e-134 481.9 283 89.8
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 7.2e-122 441.0 273 82.4
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 3.9e-120 435.3 275 82.5
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 7.4e-119 431.0 263 82.9
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 8.2e-118 427.6 273 80.6
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 5.3e-117 424.9 270 80.4
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 6.5e-115 417.9 263 81.0
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 6.5e-115 417.9 271 79.0
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 8.5e-115 417.5 271 79.0
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 3.6e-113 412.1 271 79.0
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 6.1e-113 411.4 271 79.3
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 6.1e-113 411.4 271 79.0
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 6.7e-112 407.9 270 77.4
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 7.2e-98 361.3 271 67.5
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.0e-91 340.9 274 63.9
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 5.0e-91 338.6 274 63.5
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.9e-90 336.7 274 62.8
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.4e-88 330.5 274 62.4
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.2e-87 327.4 271 62.0
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 2.0e-87 326.6 273 61.9
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.7e-86 323.6 284 60.9
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.0e-84 316.6 272 62.1
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 5.9e-84 315.1 316 57.3
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 3.0e-83 312.8 283 60.1
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 3.0e-83 312.8 274 59.5
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 5.0e-83 312.0 279 59.5
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.3e-82 308.9 280 58.9
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.2e-81 307.4 278 58.6
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.2e-81 307.4 282 58.5
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 2.8e-81 306.2 273 59.7
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 4.7e-81 305.4 270 59.3
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 6.2e-81 305.1 279 58.1
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.1e-80 302.8 280 57.9
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 6.8e-80 301.6 285 56.8
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 6.8e-80 301.6 280 57.5
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.2e-79 300.8 280 57.5
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.2e-79 300.8 288 56.2
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.0e-79 300.1 276 59.1
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.6e-79 299.7 276 58.7
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 3.4e-79 299.3 278 58.6
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 4.4e-79 298.9 275 57.5
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 4.4e-79 298.9 274 57.7
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 7.5e-79 298.1 278 57.2
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.7e-78 297.0 273 58.6
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.9e-78 296.2 276 55.8
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 2.9e-78 296.2 278 57.2
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.4e-77 293.1 280 56.8
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.2e-77 292.7 275 58.9
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 3.2e-77 292.7 278 57.6
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 9.2e-77 291.2 284 54.2
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.2e-76 290.8 276 57.6
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 2.7e-76 289.7 296 54.4
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 4.6e-76 288.9 282 54.3
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.3e-75 287.3 279 55.9
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 5.0e-75 285.4 277 57.0
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.5e-74 283.1 282 56.0
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 2.5e-74 283.1 273 55.7
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 7.3e-74 281.6 278 55.4
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.2e-73 280.8 280 53.2
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.1e-73 278.1 277 54.2
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.1e-72 277.7 301 52.8
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.8e-72 276.9 272 54.0
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.2e-71 274.2 281 52.0
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 2.0e-71 273.5 281 54.1
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 5.8e-71 271.9 280 50.7
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 2.9e-70 269.6 272 53.3
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 2.9e-70 269.6 281 51.6
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 3.7e-70 269.2 281 51.2
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.9e-69 266.9 165 81.2
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 4.1e-69 265.8 280 51.8
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 3.5e-68 262.7 278 52.5
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.7e-67 260.4 283 50.9
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.9e-66 256.9 279 52.3
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 1.9e-66 256.9 277 52.0
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.5e-66 256.5 279 52.7
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 9.5e-66 254.6 278 50.4
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 6.2e-65 251.9 273 51.3
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 8.1e-65 251.5 273 50.9
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.5e-63 247.3 272 51.1
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 3.8e-62 242.7 246 54.9
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 6.4e-62 241.9 297 50.2
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 9.2e-61 238.0 208 57.2
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 3.5e-60 236.1 276 47.1
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 5.1e-59 232.3 280 48.9
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 2.8e-57 226.5 274 48.9
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 6.9e-56 221.9 306 43.5
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 2.6e-55 219.9 172 66.3
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 4.4e-55 219.2 165 65.5
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 5.8e-55 218.8 276 47.5
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 2.7e-52 209.9 278 46.8
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 6.6e-51 205.3 276 44.2
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 6.6e-51 205.3 275 43.3
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.3e-49 201.1 111 90.1
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 2.1e-49 200.3 158 63.3
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.8e-43 180.6 292 39.7
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.0e-43 179.9 275 39.3
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.5e-42 177.6 151 59.6
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 7.4e-42 175.3 278 41.0
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.1e-41 173.7 101 81.2
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 4.8e-41 172.6 299 40.5
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 6.2e-41 172.2 100 81.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.4e-40 170.2 270 39.6
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 4.0e-40 169.5 279 39.8
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 2.0e-39 167.2 278 39.2
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.6e-39 166.8 291 40.5
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 5.8e-39 165.6 276 39.5
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 5.8e-39 165.6 311 37.9
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 5.8e-39 165.6 109 76.1
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 2.1e-36 157.1 87 86.2
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.1e-36 157.1 216 44.4
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 2.5e-34 150.2 149 52.3
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 7.4e-34 148.7 191 45.0
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.1e-32 143.3 171 45.0
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 9.0e-32 141.7 276 36.2
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.0e-30 138.3 278 37.4
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 4.9e-30 136.0 236 38.1
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.5e-30 135.6 278 37.1
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.1e-28 130.6 100 63.0
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.7e-28 130.2 278 37.4
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.4e-24 117.1 106 57.5
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 7.6e-23 112.1 151 41.7
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-21 108.2 200 37.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.2e-20 104.8 152 38.8
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.7e-20 103.6 204 34.8
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.6e-20 103.2 152 38.2
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 6.1e-20 102.4 107 56.1
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 4.3e-18 96.3 63 76.2
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.1e-16 90.1 50 84.0
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 4.5e-07 59.7 97 40.2
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.7e-07 58.9 100 36.0
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 2.2e-06 57.4 37 70.3
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 8.5e-06 55.5 94 37.2


User provided reference genes

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