Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31356H Brassica oleracea HOM05D000081 ORTHO05D021434 2.1e-35 151.8 72 100.0
BcaC05g26588 Brassica carinata HOM05D002336 ORTHO05D002526 2.7e-35 151.4 72 98.6
BcaC05g26591 Brassica carinata HOM05D002336 ORTHO05D002526 2.7e-35 151.4 72 98.6
BcaNung06947 Brassica carinata HOM05D000081 ORTHO05D021434 3.0e-34 147.9 72 98.6
BraA02t07774Z Brassica rapa HOM05D000081 ORTHO05D021434 1.0e-29 132.9 72 88.9
C02p24630 Brassica napus HOM05D000081 ORTHO05D021434 2.4e-23 111.7 61 85.2
BcaC03g14949 Brassica carinata HOM05D000081 ORTHO05D021434 1.2e-22 109.4 61 83.6
Thhalv10024810m.g Eutrema salsugineum HOM05D000081 ORTHO05D000036 2.6e-22 108.2 58 86.2
BcaC09g52249 Brassica carinata HOM05D000081 ORTHO05D000036 5.8e-22 107.1 58 86.2
AL7G26250 Arabidopsis lyrata HOM05D000081 ORTHO05D000036 1.3e-21 105.9 58 84.5
A01p17900 Brassica napus HOM05D000081 ORTHO05D000036 1.4e-20 102.4 59 83.1
BraA01t01744Z Brassica rapa HOM05D000081 ORTHO05D000036 1.4e-20 102.4 59 83.1
BolC7t45989H Brassica oleracea HOM05D000081 ORTHO05D000036 4.2e-20 100.9 59 83.1
BraA03t14751Z Brassica rapa HOM05D000081 ORTHO05D000036 7.1e-20 100.1 59 83.1
C07p55250 Brassica napus HOM05D000081 ORTHO05D000036 9.3e-20 99.8 57 86.0
A03p56810 Brassica napus HOM05D000081 ORTHO05D000036 1.6e-19 99.0 57 86.0
BcaC09g50632 Brassica carinata HOM05D000081 ORTHO05D000036 2.1e-19 98.6 59 81.4
C01p22690 Brassica napus HOM05D000081 ORTHO05D000036 2.1e-19 98.6 59 81.4
BolC1t02199H Brassica oleracea HOM05D000081 ORTHO05D000036 2.1e-19 98.6 59 81.4
BcaB03g12502 Brassica carinata HOM05D000081 ORTHO05D000036 3.5e-19 97.8 59 79.7
A08p20760 Brassica napus HOM05D000081 ORTHO05D000036 8.7e-18 93.2 59 81.4
BcaC07g38240 Brassica carinata HOM05D000081 ORTHO05D000036 2.5e-17 91.7 59 79.7
C08p09900 Brassica napus HOM05D000081 ORTHO05D000036 2.5e-17 91.7 59 79.7
BolC8t48667H Brassica oleracea HOM05D000081 ORTHO05D000036 2.5e-17 91.7 59 79.7
BraA08t34030Z Brassica rapa HOM05D000081 ORTHO05D000036 2.5e-17 91.7 59 79.7
AT4G26640 Arabidopsis thaliana HOM05D000081 ORTHO05D000036 5.7e-17 90.5 58 72.4
Aa31LG3G11510 Aethionema arabicum HOM05D000081 ORTHO05D000036 5.3e-15 84.0 64 65.6
Carub.0007s1423 Capsella rubella HOM05D000081 ORTHO05D000036 5.3e-15 84.0 44 88.6
Sp7g24610 Schrenkiella parvula HOM05D000081 ORTHO05D000036 5.3e-15 84.0 44 88.6
Sp6g17480 Schrenkiella parvula HOM05D000081 ORTHO05D000036 1.2e-14 82.8 62 67.7
BcaB01g04359 Brassica carinata HOM05D000081 ORTHO05D000036 7.7e-14 80.1 59 66.1
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 7.7e-14 80.1 59 66.1
THA.LOC104813446 Tarenaya hassleriana HOM05D000081 ORTHO05D000036 7.7e-14 80.1 61 68.9
Thhalv10013115m.g Eutrema salsugineum HOM05D000081 ORTHO05D000036 1.0e-13 79.7 64 65.6
MD03G1188900 Malus domestica HOM05D000081 ORTHO05D000036 5.0e-13 77.4 62 66.1
BcaC01g06382 Brassica carinata HOM05D000081 ORTHO05D000036 2.5e-12 75.1 62 61.3
C03p16390 Brassica napus HOM05D000081 ORTHO05D000036 2.5e-12 75.1 62 61.3
BolC3t14061H Brassica oleracea HOM05D000081 ORTHO05D000036 2.5e-12 75.1 62 61.3
CsaV3_3G004410 Cucumis sativus L. HOM05D000081 ORTHO05D000036 5.5e-12 73.9 65 60.0
Cpa.g.sc12.196 Carica papaya HOM05D000081 ORTHO05D000036 7.2e-12 73.6 59 66.1
MD11G1205000 Malus domestica HOM05D000081 ORTHO05D000036 9.4e-12 73.2 67 59.7
Manes.03G137600 Manihot esculenta HOM05D000081 ORTHO05D000036 9.4e-12 73.2 66 62.1
Manes.03G137804 Manihot esculenta HOM05D000081 ORTHO05D000036 9.4e-12 73.2 66 62.1
Haze_09784 Corylus avellana HOM05D000081 ORTHO05D000036 1.2e-11 72.8 60 65.0
MELO3C014134.2 Cucumis melo HOM05D000081 ORTHO05D000036 1.2e-11 72.8 60 63.3
THA.LOC104817700 Tarenaya hassleriana HOM05D000081 ORTHO05D000036 1.2e-11 72.8 69 56.5
Phvul.006G053300 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 1.6e-11 72.4 60 60.0
CARHR234230 Cardamine hirsuta HOM05D000081 ORTHO05D000036 2.7e-11 71.6 40 80.0
Lalb_Chr15g0081951 Lupinus albus HOM05D000081 ORTHO05D000036 2.7e-11 71.6 66 57.6
Potri.001G361600 Populus trichocarpa HOM05D000081 ORTHO05D000036 2.7e-11 71.6 59 62.7
Potri.011G087900 Populus trichocarpa HOM05D000081 ORTHO05D000036 2.7e-11 71.6 66 59.1
Sed0009767 Sechium edule HOM05D000081 ORTHO05D000036 2.7e-11 71.6 61 62.3
CANSAT11G1750 Cannabis sativa HOM05D000081 ORTHO05D000036 3.6e-11 71.2 59 62.7
FvH4_3g24010 Fragaria vesca HOM05D000081 ORTHO05D000036 3.6e-11 71.2 68 57.4
FAN11G3949 Fragaria x ananassa HOM05D000081 ORTHO05D000036 3.6e-11 71.2 68 57.4
Prupe.4G232600 Prunus persica HOM05D000081 ORTHO05D000036 3.6e-11 71.2 67 58.2
RcHm_v2.0_Chr5g0042581 Rosa chinensis HOM05D000081 ORTHO05D000036 3.6e-11 71.2 68 57.4
CiPaw.12G135700 Carya illinoinensis HOM05D000081 ORTHO05D000036 4.6e-11 70.9 76 53.9
Duzib213G1013 Durio zibethinus HOM05D000081 ORTHO05D000036 4.6e-11 70.9 70 58.6
Sabra11G0074000 Salix brachista HOM05D000081 ORTHO05D000036 4.6e-11 70.9 75 53.3
Sabra11G0079700 Salix brachista HOM05D000081 ORTHO05D000036 4.6e-11 70.9 75 53.3
VMungo0540G0142 Vigna mungo HOM05D000081 ORTHO05D000036 4.6e-11 70.9 60 58.3
arahy.Tifrunner.gnm1.ann1.62XZQ4 Arachis hypogaea HOM05D000081 ORTHO05D000036 7.9e-11 70.1 59 61.0
arahy.Tifrunner.gnm1.ann1.M3PRRA Arachis hypogaea HOM05D000081 ORTHO05D000036 7.9e-11 70.1 59 61.0
FAN16G3136 Fragaria x ananassa HOM05D000081 ORTHO05D000036 7.9e-11 70.1 68 55.9
FAN21G3648 Fragaria x ananassa HOM05D000081 ORTHO05D000036 7.9e-11 70.1 68 55.9
FAN25G1891 Fragaria x ananassa HOM05D000081 ORTHO05D000036 7.9e-11 70.1 68 55.9
GSVIVG01037775001 Vitis vinifera HOM05D000081 ORTHO05D000036 7.9e-11 70.1 72 54.2
Glyma.18G081200 Glycine max HOM05D000081 ORTHO05D000036 1.0e-10 69.7 59 62.7
Thecc.07G022800 Theobroma cacao HOM05D000081 ORTHO05D000036 1.0e-10 69.7 60 63.3
Actinidia00095 Actinidia chinensis HOM05D000081 ORTHO05D000036 1.4e-10 69.3 59 62.7
FAN25G2443 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.4e-10 69.3 68 55.9
Glyma.08G325800 Glycine max HOM05D000081 ORTHO05D000036 1.4e-10 69.3 59 62.7
Gohir.D01G073200 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.4e-10 69.3 60 63.3
Gorai.002G096200 Gossypium raimondii HOM05D000081 ORTHO05D000036 1.4e-10 69.3 60 63.3
Gohir.A01G087000 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.8e-10 68.9 60 63.3
Dinv10309 Davidia involucrata HOM05D000081 ORTHO05D000036 2.3e-10 68.6 67 55.2
Manes.15G063600 Manihot esculenta HOM05D000081 ORTHO05D000036 2.3e-10 68.6 75 53.3
Rhsim06G0226600 Rhododendron simsii HOM05D000081 ORTHO05D000036 2.3e-10 68.6 59 62.7
Actinidia05034 Actinidia chinensis HOM05D000081 ORTHO05D000036 3.0e-10 68.2 66 56.1
Rhsim04G0015000 Rhododendron simsii HOM05D000081 ORTHO05D000036 3.0e-10 68.2 60 61.7
Dinv40833 Davidia involucrata HOM05D000081 ORTHO05D000036 3.9e-10 67.8 66 56.1
QL08p005532 Quercus lobata HOM05D000081 ORTHO05D000036 3.9e-10 67.8 60 60.0
Gohir.A13G134600 Gossypium hirsutum HOM05D000081 ORTHO05D000036 5.1e-10 67.4 58 62.1
Gohir.D13G139000 Gossypium hirsutum HOM05D000081 ORTHO05D000036 5.1e-10 67.4 58 62.1
Gorai.013G155500 Gossypium raimondii HOM05D000081 ORTHO05D000036 5.1e-10 67.4 58 62.1
VMungo0647G2175 Vigna mungo HOM05D000081 ORTHO05D000036 5.1e-10 67.4 58 62.1
Lj6g0018412 Lotus japonicus HOM05D000081 ORTHO05D000036 6.7e-10 67.0 66 54.5
Lalb_Chr04g0248001 Lupinus albus HOM05D000081 ORTHO05D000036 6.7e-10 67.0 57 61.4
Psat5g171000 Pisum sativum HOM05D000081 ORTHO05D000036 6.7e-10 67.0 67 53.7
Aqoxy4G02209 Aquilegia oxysepala HOM05D000081 ORTHO05D000036 8.8e-10 66.6 71 54.9
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 8.8e-10 66.6 58 60.3
CiPaw.11G200800 Carya illinoinensis HOM05D000081 ORTHO05D000036 8.8e-10 66.6 69 55.1
Lalb_Chr10g0107301 Lupinus albus HOM05D000081 ORTHO05D000036 8.8e-10 66.6 68 54.4
SGA_v2.0_scaffold168G38529 Striga asiatica HOM05D000081 ORTHO05D000036 8.8e-10 66.6 51 66.7
Medtr5g094430 Medicago truncatula HOM05D000081 ORTHO05D000036 1.1e-09 66.2 67 55.2
Phvul.008G275300 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 1.1e-09 66.2 58 60.3
Atru.chr2.3616 Acer truncatum HOM05D000081 ORTHO05D000036 1.5e-09 65.9 59 59.3
Ca_06370_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 1.5e-09 65.9 67 55.2
Cc05_g14660 Coffea canephora HOM05D000081 ORTHO05D000036 1.5e-09 65.9 58 60.3
COL.COLO4_09782 Corchorus olitorius HOM05D000081 ORTHO05D000036 1.5e-09 65.9 59 59.3
Eucgr.F03522 Eucalyptus grandis HOM05D000081 ORTHO05D000036 1.5e-09 65.9 59 59.3
Psat2g009320 Pisum sativum HOM05D000081 ORTHO05D000036 1.5e-09 65.9 60 58.3
vmacro09671 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 1.5e-09 65.9 59 57.6
CSS0007384 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 2.0e-09 65.5 66 53.0
Ca_20154_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 2.0e-09 65.5 59 57.6
TPR.G31711 Trifolium pratense HOM05D000081 ORTHO05D000036 2.0e-09 65.5 63 55.6
Duzib170G0410 Durio zibethinus HOM05D000081 ORTHO05D000036 2.5e-09 65.1 59 59.3
Eucgr.F00621 Eucalyptus grandis HOM05D000081 ORTHO05D000036 2.5e-09 65.1 60 63.3
Glyma.02G297400 Glycine max HOM05D000081 ORTHO05D000036 2.5e-09 65.1 61 57.4
TPR.G1939 Trifolium pratense HOM05D000081 ORTHO05D000036 2.5e-09 65.1 58 56.9
Medtr3g056100 Medicago truncatula HOM05D000081 ORTHO05D000036 3.3e-09 64.7 59 57.6
PSO541G0652 Papaver somniferum HOM05D000081 ORTHO05D000036 3.3e-09 64.7 63 52.4
PSO675G6674 Papaver somniferum HOM05D000081 ORTHO05D000036 3.3e-09 64.7 63 52.4
GSVIVG01007006001 Vitis vinifera HOM05D000081 ORTHO05D000036 3.3e-09 64.7 63 58.7
Glyma.14G016200 Glycine max HOM05D000081 ORTHO05D000036 4.3e-09 64.3 61 57.4
Gohir.A08G024700 Gossypium hirsutum HOM05D000081 ORTHO05D000036 4.3e-09 64.3 58 60.3
Hma1.2p1_1199F.1_g266480 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 5.7e-09 63.9 65 56.9
Lj1C884G14 Lonicera japonica HOM05D000081 ORTHO05D000036 5.7e-09 63.9 62 59.7
Ah.06g181110 Amaranthus hybridus HOM05D000081 ORTHO05D000036 7.4e-09 63.5 70 55.7
Dinv19886 Davidia involucrata HOM05D000081 ORTHO05D000036 7.4e-09 63.5 59 61.0
Gohir.D08G035200 Gossypium hirsutum HOM05D000081 ORTHO05D000036 7.4e-09 63.5 59 55.9
Gorai.004G033200 Gossypium raimondii HOM05D000081 ORTHO05D000036 7.4e-09 63.5 59 55.9
Nn1g03251 Nelumbo nucifera HOM05D000081 ORTHO05D000036 7.4e-09 63.5 71 50.7
PGR031G3564 Punica granatum HOM05D000081 ORTHO05D000036 7.4e-09 63.5 61 60.7
SGA_v2.0_scaffold171G38889 Striga asiatica HOM05D000081 ORTHO05D000036 9.7e-09 63.2 53 64.2
Ciclev10007882m.g Citrus clementina HOM05D000081 ORTHO05D000036 1.3e-08 62.8 59 57.6
TWI39G0106 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 1.3e-08 62.8 59 55.9
TWI38G1623 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 1.7e-08 62.4 60 56.7
LjContig00272g0017382 Lotus japonicus HOM05D000081 ORTHO05D000036 2.8e-08 61.6 64 50.0
Hma1.2p1_0036F.1_g022760 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 3.7e-08 61.2 66 54.5
Peaxi162Scf00955g00032 Petunia axillaris HOM05D000081 ORTHO05D000036 3.7e-08 61.2 58 55.2
Oeu005970.1 Olea europaea HOM05D000081 ORTHO05D000036 4.8e-08 60.8 60 55.0
PGR083G1915 Punica granatum HOM05D000081 ORTHO05D000036 4.8e-08 60.8 59 57.6
vmacro11562 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 4.8e-08 60.8 56 57.1
Ah.04g166420 Amaranthus hybridus HOM05D000081 ORTHO05D000036 8.2e-08 60.1 59 57.6
Nn1g07436 Nelumbo nucifera HOM05D000081 ORTHO05D000036 8.2e-08 60.1 73 52.1
Sc03g0008010 Simmondsia chinensis HOM05D000081 ORTHO05D000036 8.2e-08 60.1 60 53.3
CAN.G337.30 Capsicum annuum HOM05D000081 ORTHO05D000036 1.1e-07 59.7 56 53.6
Sopen07g033470 Solanum pennellii HOM05D000081 ORTHO05D000036 1.1e-07 59.7 56 55.4
PGSC0003DMG400022290 Solanum tuberosum HOM05D000081 ORTHO05D000036 1.1e-07 59.7 56 55.4
Nitab4.5_0008886g0030 Nicotiana tabacum HOM05D000081 ORTHO05D000036 1.4e-07 59.3 58 55.2
ClCG10G004600 Citrullus lanatus HOM05D000081 ORTHO05D000036 1.8e-07 58.9 52 61.5
Nitab4.5_0000163g0350 Nicotiana tabacum HOM05D000081 ORTHO05D000036 1.8e-07 58.9 57 56.1
Nitab4.5_0003612g0070 Nicotiana tabacum HOM05D000081 ORTHO05D000036 1.8e-07 58.9 58 55.2
Hund23130 Selenicereus undatus HOM05D000081 ORTHO05D000036 1.8e-07 58.9 66 50.0
Sc16g0003550 Simmondsia chinensis HOM05D000081 ORTHO05D000036 1.8e-07 58.9 69 50.7
PGSC0003DMG400029815 Solanum tuberosum HOM05D000081 ORTHO05D000036 1.8e-07 58.9 58 53.4
TAR626G0547 Trochodendron aralioides HOM05D000081 ORTHO05D000036 1.8e-07 58.9 71 50.7
CAN.G489.4 Capsicum annuum HOM05D000081 ORTHO05D000036 2.4e-07 58.5 58 55.2
AUR62017056 Chenopodium quinoa HOM05D000081 ORTHO05D000036 3.1e-07 58.2 60 50.0
Oeu019609.1 Olea europaea HOM05D000081 ORTHO05D000036 3.1e-07 58.2 67 49.3
Peaxi162Scf00285g00820 Petunia axillaris HOM05D000081 ORTHO05D000036 4.1e-07 57.8 56 53.6
Solyc12g014610.2 Solanum lycopersicum HOM05D000081 ORTHO05D000036 4.1e-07 57.8 58 51.7
Sopen12g007500 Solanum pennellii HOM05D000081 ORTHO05D000036 4.1e-07 57.8 58 51.7
Solyc07g065260.4 Solanum lycopersicum HOM05D000081 ORTHO05D000036 5.3e-07 57.4 55 54.5
EL10Ac4g07618 Beta vulgaris HOM05D000081 ORTHO05D000036 6.9e-07 57.0 61 52.5
AUR62040662 Chenopodium quinoa HOM05D000081 ORTHO05D000036 6.9e-07 57.0 60 50.0
Nitab4.5_0000461g0070 Nicotiana tabacum HOM05D000081 ORTHO05D000036 6.9e-07 57.0 57 54.4
Hund01920 Selenicereus undatus HOM05D000081 ORTHO05D000036 1.5e-06 55.8 61 54.1
AL8G31130 Arabidopsis lyrata HOM05D000081 ORTHO05D021434 3.4e-06 54.7 41 58.5


User provided reference genes

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