Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31337H Brassica oleracea HOM05D000079 ORTHO05D020150 5.6e-26 120.2 60 100.0
C05p26250 Brassica napus HOM05D000079 ORTHO05D020150 1.7e-19 98.6 51 94.1
A09p38430 Brassica napus HOM05D000079 ORTHO05D006933 2.0e-15 85.1 43 95.3
BraA09t39352Z Brassica rapa HOM05D000079 ORTHO05D006933 2.0e-15 85.1 43 95.3
BcaC05g26757 Brassica carinata HOM05D000079 ORTHO05D006933 2.1e-12 75.1 41 87.8
Sp1g23840 Schrenkiella parvula HOM05D000079 ORTHO05D006933 3.0e-11 71.2 41 80.5
AL1G41150 Arabidopsis lyrata HOM05D000079 ORTHO05D006933 2.5e-10 68.2 43 74.4
Thhalv10007633m.g Eutrema salsugineum HOM05D000079 ORTHO05D006933 2.5e-10 68.2 41 73.2
Prupe.1G374800 Prunus persica HOM05D000079 ORTHO05D006933 4.3e-10 67.4 41 70.7
THA.LOC104822832 Tarenaya hassleriana HOM05D000079 ORTHO05D006933 4.3e-10 67.4 41 73.2
Manes.18G020700 Manihot esculenta HOM05D000079 ORTHO05D006933 5.6e-10 67.0 41 70.7
Potri.005G230900 Populus trichocarpa HOM05D000079 ORTHO05D006933 5.6e-10 67.0 41 68.3
AT1G27620 Arabidopsis thaliana HOM05D000079 ORTHO05D006933 7.3e-10 66.6 43 69.8
Sabra05G0178300 Salix brachista HOM05D000079 ORTHO05D006933 7.3e-10 66.6 41 68.3
BcaC01g01586 Brassica carinata HOM05D000079 ORTHO05D006933 1.2e-09 65.9 41 78.0
A08p26160 Brassica napus HOM05D000079 ORTHO05D006933 1.2e-09 65.9 41 78.0
C03p74390 Brassica napus HOM05D000079 ORTHO05D006933 1.2e-09 65.9 41 78.0
BolC3t19692H Brassica oleracea HOM05D000079 ORTHO05D006933 1.2e-09 65.9 41 78.0
BraA08t34566Z Brassica rapa HOM05D000079 ORTHO05D006933 1.2e-09 65.9 41 78.0
COL.COLO4_26251 Corchorus olitorius HOM05D000079 ORTHO05D006933 1.6e-09 65.5 41 68.3
Duzib116G0788 Durio zibethinus HOM05D000079 ORTHO05D006933 1.6e-09 65.5 41 70.7
MD15G1022800 Malus domestica HOM05D000079 ORTHO05D006933 1.6e-09 65.5 41 70.7
Haze_22546 Corylus avellana HOM05D000079 ORTHO05D006933 2.8e-09 64.7 41 63.4
Thecc.08G032600 Theobroma cacao HOM05D000079 ORTHO05D006933 2.8e-09 64.7 41 70.7
Aa31sc143G20 Aethionema arabicum HOM05D000079 ORTHO05D006933 3.6e-09 64.3 41 73.2
Manes.05G155400 Manihot esculenta HOM05D000079 ORTHO05D006933 3.6e-09 64.3 41 68.3
Potri.002G032200 Populus trichocarpa HOM05D000079 ORTHO05D006933 3.6e-09 64.3 41 65.9
CSS0031595 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D006933 4.7e-09 63.9 41 61.0
Gohir.D06G003500 Gossypium hirsutum HOM05D000079 ORTHO05D006933 4.7e-09 63.9 41 65.9
Gorai.010G008100 Gossypium raimondii HOM05D000079 ORTHO05D006933 4.7e-09 63.9 41 65.9
MD08G1026100 Malus domestica HOM05D000079 ORTHO05D006933 4.7e-09 63.9 41 68.3
Sabra02G0026100 Salix brachista HOM05D000079 ORTHO05D006933 4.7e-09 63.9 40 67.5
Atru.chr13.416 Acer truncatum HOM05D000079 ORTHO05D006933 6.2e-09 63.5 41 65.9
TWI12G0527 Tripterygium wilfordii HOM05D000079 ORTHO05D006933 6.2e-09 63.5 41 68.3
Cfa013869 Carpinus fangiana HOM05D000079 ORTHO05D006933 1.4e-08 62.4 41 58.5
Nn5g29697 Nelumbo nucifera HOM05D000079 ORTHO05D006933 1.4e-08 62.4 41 68.3
Sed0025914 Sechium edule HOM05D000079 ORTHO05D006933 1.4e-08 62.4 41 61.0
Duzib093G0541 Durio zibethinus HOM05D000079 ORTHO05D006933 1.8e-08 62.0 41 65.9
Gohir.A06G007000 Gossypium hirsutum HOM05D000079 ORTHO05D006933 1.8e-08 62.0 41 63.4
HanXRQChr03g0069671 Helianthus annuus HOM05D000079 ORTHO05D020150 1.8e-08 62.0 41 63.4
Nitab4.5_0001861g0020 Nicotiana tabacum HOM05D000079 ORTHO05D006933 2.3e-08 61.6 41 63.4
Nitab4.5_0006379g0010 Nicotiana tabacum HOM05D000079 ORTHO05D006933 2.3e-08 61.6 41 63.4
Carub.0001s2613 Capsella rubella HOM05D000079 ORTHO05D006933 3.1e-08 61.2 44 70.5
CARHR134190 Cardamine hirsuta HOM05D000079 ORTHO05D006933 3.1e-08 61.2 43 67.4
ECA246G1763 Erigeron canadensis HOM05D000079 ORTHO05D006933 3.1e-08 61.2 41 65.9
vmacro21679 Vaccinium macrocarpon HOM05D000079 ORTHO05D006933 3.1e-08 61.2 41 58.5
Oeu030593.1 Olea europaea HOM05D000079 ORTHO05D006933 4.0e-08 60.8 41 63.4
Ciclev10003709m.g Citrus clementina HOM05D000079 ORTHO05D006933 5.2e-08 60.5 41 58.5
Rhsim06G0028900 Rhododendron simsii HOM05D000079 ORTHO05D006933 5.2e-08 60.5 41 61.0
Actinidia15359 Actinidia chinensis HOM05D000079 ORTHO05D006933 8.9e-08 59.7 41 56.1
MBI10_g00748_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D006933 8.9e-08 59.7 41 61.0
PGR031G1553 Punica granatum HOM05D000079 ORTHO05D006933 8.9e-08 59.7 41 63.4
QL02p009521 Quercus lobata HOM05D000079 ORTHO05D006933 8.9e-08 59.7 41 58.5
HanXRQChr05g0151281 Helianthus annuus HOM05D000079 ORTHO05D006933 1.2e-07 59.3 41 61.0
Eucgr.F01597 Eucalyptus grandis HOM05D000079 ORTHO05D006933 1.5e-07 58.9 41 65.9
Lsat_1_v5_gn_5_26801 Lactuca sativa HOM05D000079 ORTHO05D006933 1.5e-07 58.9 41 61.0
Nn1g05817 Nelumbo nucifera HOM05D000079 ORTHO05D006933 1.5e-07 58.9 41 65.9
Peaxi162Scf00140g01012 Petunia axillaris HOM05D000079 ORTHO05D006933 1.5e-07 58.9 41 61.0
TAR628G0508 Trochodendron aralioides HOM05D000079 ORTHO05D006933 1.5e-07 58.9 41 65.9
Ca_02081_v3 Cicer arietinum L. HOM05D000079 ORTHO05D020150 3.4e-07 57.8 43 58.1
MELO3C010965.2 Cucumis melo HOM05D000079 ORTHO05D006933 4.4e-07 57.4 41 58.5
Glyma.14G071600 Glycine max HOM05D000079 ORTHO05D006933 4.4e-07 57.4 41 61.0
Cc10_g02480 Coffea canephora HOM05D000079 ORTHO05D006933 5.8e-07 57.0 41 61.0
CsaV3_2G028970 Cucumis sativus L. HOM05D000079 ORTHO05D006933 5.8e-07 57.0 41 58.5
GSVIVG01009763001 Vitis vinifera HOM05D000079 ORTHO05D006933 5.8e-07 57.0 41 56.1
Aqoxy6G01180 Aquilegia oxysepala HOM05D000079 ORTHO05D006933 7.6e-07 56.6 41 63.4
ClCG08G014780 Citrullus lanatus HOM05D000079 ORTHO05D006933 7.6e-07 56.6 41 56.1
Lj5g0010160 Lotus japonicus HOM05D000079 ORTHO05D006933 7.6e-07 56.6 41 58.5
RcHm_v2.0_Chr6g0301621 Rosa chinensis HOM05D000079 ORTHO05D006933 7.6e-07 56.6 42 59.5
Aqoxy3G02272 Aquilegia oxysepala HOM05D000079 ORTHO05D006933 9.9e-07 56.2 41 63.4
EL10Ac1g00626 Beta vulgaris HOM05D000079 ORTHO05D006933 9.9e-07 56.2 41 61.0
Lj4A35T44 Lonicera japonica HOM05D000079 ORTHO05D006933 9.9e-07 56.2 41 58.5
Ca_29782_v3 Cicer arietinum L. HOM05D000079 ORTHO05D006933 1.3e-06 55.8 41 56.1
CANSAT25G3258 Cannabis sativa HOM05D000079 ORTHO05D006933 1.7e-06 55.5 42 61.9
AUR62014488 Chenopodium quinoa HOM05D000079 ORTHO05D006933 1.7e-06 55.5 41 61.0
CiPaw.07G157600 Carya illinoinensis HOM05D000079 ORTHO05D006933 2.2e-06 55.1 41 56.1
DCAR_000388 Daucus carota HOM05D000079 ORTHO05D006933 2.2e-06 55.1 41 58.5
FvH4_2g39380 Fragaria vesca HOM05D000079 ORTHO05D006933 2.2e-06 55.1 42 57.1
FAN15G3710 Fragaria x ananassa HOM05D000079 ORTHO05D006933 2.2e-06 55.1 42 57.1
FAN20G3213 Fragaria x ananassa HOM05D000079 ORTHO05D006933 2.2e-06 55.1 42 57.1
FAN26G2717 Fragaria x ananassa HOM05D000079 ORTHO05D006933 2.2e-06 55.1 42 57.1
FAN27G1647 Fragaria x ananassa HOM05D000079 ORTHO05D006933 2.2e-06 55.1 42 57.1
Ca_02083_v3 Cicer arietinum L. HOM05D000079 ORTHO05D020150 2.9e-06 54.7 40 57.5
Migut.C00764 Erythranthe guttata HOM05D000079 ORTHO05D006933 2.9e-06 54.7 41 56.1
Solyc04g080720.4 Solanum lycopersicum HOM05D000079 ORTHO05D006933 2.9e-06 54.7 41 56.1
Dinv04826 Davidia involucrata HOM05D000079 ORTHO05D006933 3.7e-06 54.3 42 64.3
Dinv31783 Davidia involucrata HOM05D000079 ORTHO05D006933 3.7e-06 54.3 42 64.3
Psat5g015800 Pisum sativum HOM05D000079 ORTHO05D006933 3.7e-06 54.3 41 53.7
Hund26900 Selenicereus undatus HOM05D000079 ORTHO05D006933 3.7e-06 54.3 41 53.7
MSTRG.1252 Avicennia marina HOM05D000079 ORTHO05D006933 4.9e-06 53.9 41 63.4
Cpa.g.sc99.30 Carica papaya HOM05D000079 ORTHO05D006933 4.9e-06 53.9 41 58.5
AUR62034510 Chenopodium quinoa HOM05D000079 ORTHO05D020150 4.9e-06 53.9 40 57.5
Medtr3g112180 Medicago truncatula HOM05D000079 ORTHO05D006933 4.9e-06 53.9 41 56.1
Glyma.06G029900 Glycine max HOM05D000079 ORTHO05D006933 6.4e-06 53.5 41 53.7
PGR083G0166 Punica granatum HOM05D000079 ORTHO05D006933 6.4e-06 53.5 40 50.0
Sc26g0003400 Simmondsia chinensis HOM05D000079 ORTHO05D006933 6.4e-06 53.5 41 58.5
PGSC0003DMG400003747 Solanum tuberosum HOM05D000079 ORTHO05D006933 6.4e-06 53.5 41 53.7


User provided reference genes

Program Settings