Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31254H Brassica oleracea HOM05D000171 ORTHO05D023645 2.4e-81 305.4 155 100.0
C05p25200 Brassica napus HOM05D032768 ORTHO05D023645 1.5e-67 259.6 147 87.8
BcaC05g26477 Brassica carinata HOM05D000171 ORTHO05D000101 1.3e-37 160.2 227 45.4
C08p06400 Brassica napus HOM05D000171 ORTHO05D000101 2.9e-18 95.9 280 30.0
BolC8t47486H Brassica oleracea HOM05D000171 ORTHO05D000101 2.9e-18 95.9 280 30.0
BcaB08g34490 Brassica carinata HOM05D000171 ORTHO05D000101 5.0e-18 95.1 275 30.2
BcaC07g37220 Brassica carinata HOM05D000171 ORTHO05D000101 8.4e-18 94.4 280 29.6
AT1G47300 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.6e-16 90.1 118 44.9
BcaB08g34488 Brassica carinata HOM05D000171 ORTHO05D000101 3.9e-15 85.5 282 27.7
BcaB08g34489 Brassica carinata HOM05D000171 ORTHO05D000101 3.9e-15 85.5 269 29.4
BcaC01g03188 Brassica carinata HOM05D000171 ORTHO05D032113 7.4e-14 81.3 211 33.2
A08p05700 Brassica napus HOM05D000171 ORTHO05D000101 2.2e-13 79.7 43 79.1
C06p01870 Brassica napus HOM05D000171 ORTHO05D000101 4.8e-13 78.6 295 27.1
BcaC08g42944 Brassica carinata HOM05D000171 ORTHO05D000101 6.3e-13 78.2 295 26.8
BolC6t35315H Brassica oleracea HOM05D000171 ORTHO05D000101 6.3e-13 78.2 295 26.8
AT1G47340 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.1e-12 77.4 49 65.3
Thhalv10012217m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.1e-12 77.4 44 75.0
AL1G53540 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.4e-12 76.3 49 65.3
BcaB07g33843 Brassica carinata HOM05D000171 ORTHO05D000101 2.4e-12 76.3 290 27.2
BcaC07g37260 Brassica carinata HOM05D000171 ORTHO05D000101 4.1e-12 75.5 47 68.1
Thhalv10012258m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.3e-12 75.1 40 75.0
AL1G53520 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.0e-11 73.2 49 63.3
CARHR149520 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.5e-11 72.0 43 69.8
CARHR265400 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.5e-11 72.0 48 66.7
AL3G52280 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.7e-11 71.2 100 40.0
AL9U11000 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.7e-10 70.1 39 71.8
C03p55070 Brassica napus HOM05D000171 ORTHO05D000101 2.9e-10 69.3 129 41.1
BolC3t17782H Brassica oleracea HOM05D000171 ORTHO05D000101 2.9e-10 69.3 129 41.1
Thhalv10012070m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.9e-10 69.3 57 54.4
Carub.0001s3612 Capsella rubella HOM05D000171 ORTHO05D000101 3.8e-10 68.9 43 69.8
Thhalv10012242m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.8e-10 68.9 39 71.8
AT2G02890 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.0e-10 68.6 41 68.3
AL1G53500 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.5e-10 67.8 261 24.9
AL9U10990 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.5e-10 67.8 235 27.2
CARHR219990 Cardamine hirsuta HOM05D000171 ORTHO05D000101 8.5e-10 67.8 49 63.3
Thhalv10009603m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.5e-10 67.8 66 53.0
AL5G12460 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.5e-09 66.2 54 59.3
AL5G12480 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.5e-09 66.2 54 59.3
CARHR265180 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.5e-09 66.2 37 70.3
AL5G12470 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.2e-09 65.9 54 57.4
Carub.0003s2952 Capsella rubella HOM05D000171 ORTHO05D000101 4.2e-09 65.5 54 59.3
AT1G47350 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.5e-09 65.1 39 64.1
AT2G02660 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.5e-09 65.1 54 55.6
Carub.0003s2953 Capsella rubella HOM05D000171 ORTHO05D000101 7.2e-09 64.7 37 70.3
AL4G10320 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 9.4e-09 64.3 44 63.6
AT3G57590 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 9.4e-09 64.3 46 54.3
Carub.0003s2948 Capsella rubella HOM05D000171 ORTHO05D000101 9.4e-09 64.3 48 62.5
Carub.0006s2882 Capsella rubella HOM05D000171 ORTHO05D000101 9.4e-09 64.3 37 70.3
AL5G12490 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-08 63.9 37 73.0
AL5G39170 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-08 63.9 46 56.5
Carub.0001s2764 Capsella rubella HOM05D000171 ORTHO05D000101 1.2e-08 63.9 37 70.3
AT2G16220 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.6e-08 63.5 37 67.6
BcaC07g40211 Brassica carinata HOM05D000171 ORTHO05D000101 1.6e-08 63.5 38 68.4
CARHR167830 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.6e-08 63.5 46 54.3
AL3G52290 Arabidopsis lyrata HOM05D000171 ORTHO05D023645 2.1e-08 63.2 38 71.1
Carub.0003s2949 Capsella rubella HOM05D000171 ORTHO05D000101 2.1e-08 63.2 37 67.6
A09p51160 Brassica napus HOM05D000171 ORTHO05D000101 2.7e-08 62.8 38 68.4
C08p33960 Brassica napus HOM05D000171 ORTHO05D000101 2.7e-08 62.8 38 68.4
BolC8t50994H Brassica oleracea HOM05D000171 ORTHO05D000101 2.7e-08 62.8 38 68.4
BraA09t40560Z Brassica rapa HOM05D000171 ORTHO05D000101 2.7e-08 62.8 38 68.4
AT2G15640 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 4.6e-08 62.0 37 67.6
AL3G47440 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.9e-08 61.2 38 71.1
AL5G23680 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.9e-08 61.2 46 58.7
AT2G23160 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 7.9e-08 61.2 53 52.8
Carub.0003s3052 Capsella rubella HOM05D000171 ORTHO05D000101 1.0e-07 60.8 49 53.1
Thhalv10009794m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.0e-07 60.8 38 68.4
AL1G45480 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.4e-07 60.5 115 34.8
AT2G16450 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.4e-07 60.5 37 64.9
AL1G45490 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.8e-07 60.1 69 43.5
CARHR037920 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.8e-07 60.1 49 53.1
Thhalv10009610m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.8e-07 60.1 38 71.1
CARHR031540 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.3e-07 59.7 39 61.5
AL1G45240 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.0e-07 59.3 92 35.9
CARHR126510 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.0e-07 59.3 61 39.3
AL1G45520 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.9e-07 58.9 50 50.0
AL4G22300 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.9e-07 58.9 45 53.3
AT1G60370 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.9e-07 58.9 45 57.8
CARHR113190 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.9e-07 58.9 97 33.0
Carub.0005s0696 Capsella rubella HOM05D000171 ORTHO05D000101 5.1e-07 58.5 54 50.0
Thhalv10015706m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.7e-07 58.2 42 57.1
AL1G45470 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.1e-06 57.4 60 48.3
AL1G46280 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.1e-06 57.4 60 46.7
AT5G52620 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.1e-06 57.4 141 30.5
Carub.0005s0433 Capsella rubella HOM05D000171 ORTHO05D000101 1.1e-06 57.4 37 64.9
Thhalv10009646m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.1e-06 57.4 43 53.5
BolC8t47533H Brassica oleracea HOM05D000171 ORTHO05D028063 1.5e-06 57.0 179 31.8
A08p06120 Brassica napus HOM05D000171 ORTHO05D028063 2.0e-06 56.6 29 79.3
BraA08t32612Z Brassica rapa HOM05D000171 ORTHO05D028063 2.0e-06 56.6 29 79.3
CARHR213730 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.0e-06 56.6 39 56.4
Thhalv10009588m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.0e-06 56.6 39 61.5
Thhalv10015881m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.0e-06 56.6 52 50.0
Carub.0001s3614 Capsella rubella HOM05D000171 ORTHO05D000101 2.5e-06 56.2 55 50.9
THA.LOC104799108 Tarenaya hassleriana HOM05D000171 ORTHO05D000101 2.5e-06 56.2 83 36.1
AL4G14910 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.3e-06 55.8 41 53.7
BraA05t21470Z Brassica rapa HOM05D000171 ORTHO05D000101 3.3e-06 55.8 101 33.7
Carub.0003s2951 Capsella rubella HOM05D000171 ORTHO05D000101 3.3e-06 55.8 37 64.9
C05p40240 Brassica napus HOM05D000171 ORTHO05D000101 4.3e-06 55.5 81 39.5
BolC5t32766H Brassica oleracea HOM05D000171 ORTHO05D000101 4.3e-06 55.5 81 39.5
Thhalv10021999m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.3e-06 55.5 48 52.1
CARHR042520 Cardamine hirsuta HOM05D000171 ORTHO05D000101 5.7e-06 55.1 37 62.2
CARHR042900 Cardamine hirsuta HOM05D000171 ORTHO05D000101 5.7e-06 55.1 37 62.2
CARHR168020 Cardamine hirsuta HOM05D000171 ORTHO05D000101 5.7e-06 55.1 54 46.3
AL756U10010 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.4e-06 54.7 38 57.9
A03p44440 Brassica napus HOM05D000171 ORTHO05D032113 7.4e-06 54.7 77 46.8
A05p25840 Brassica napus HOM05D000171 ORTHO05D000101 7.4e-06 54.7 79 38.0
BraA03t13577Z Brassica rapa HOM05D000171 ORTHO05D032113 7.4e-06 54.7 77 46.8
Carub.0001s3824 Capsella rubella HOM05D000171 ORTHO05D000101 7.4e-06 54.7 43 53.5
Carub.0004s0867 Capsella rubella HOM05D000171 ORTHO05D000101 7.4e-06 54.7 45 48.9
Thhalv10006464m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.4e-06 54.7 38 57.9
Thhalv10009370m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 9.7e-06 54.3 39 56.4


User provided reference genes

Program Settings