Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-77 292.0 144 100.0
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 3.1e-75 285.0 144 97.9
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-53 213.0 145 78.6
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-51 205.7 145 76.6
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-48 196.8 145 73.8
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 9.8e-45 183.7 146 69.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.1e-43 180.3 145 66.2
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-43 179.9 146 68.5
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-43 178.7 146 69.9
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 4.1e-43 178.3 146 69.2
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 7.0e-43 177.6 146 69.9
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 7.0e-43 177.6 146 69.2
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 7.0e-43 177.6 145 66.9
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.2e-42 176.8 145 67.6
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-42 176.4 146 68.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-42 176.4 146 68.5
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-42 176.4 146 68.5
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.5e-42 175.3 146 65.1
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.0e-41 173.7 145 65.5
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-41 173.3 142 66.2
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 6.6e-41 171.0 145 65.5
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 8.6e-41 170.6 145 65.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.3e-40 168.7 145 64.8
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 4.0e-38 161.8 144 61.8
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-36 156.8 144 61.8
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-33 145.6 119 66.4
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 8.6e-33 144.1 144 53.5
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 4.3e-32 141.7 145 58.6
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 8.1e-31 137.5 145 58.6
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.1e-30 135.6 144 53.5
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.1e-30 135.6 145 53.8
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.5e-29 133.3 145 53.1
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 3.4e-29 132.1 145 53.8
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.7e-28 129.8 145 51.0
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.9e-28 129.0 145 50.3
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-28 129.0 145 50.3
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 4.9e-28 128.3 150 52.0
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 6.4e-28 127.9 144 49.3
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-27 127.1 144 47.9
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.9e-27 126.3 145 50.3
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.4e-27 125.9 144 47.2
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.4e-27 125.9 145 47.6
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.4e-27 125.9 144 47.2
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.2e-26 123.6 145 50.3
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.6e-26 123.2 144 47.2
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.6e-26 123.2 144 45.8
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.7e-26 122.5 144 45.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.5e-26 122.1 144 46.5
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 3.5e-26 122.1 144 44.4
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.5e-26 122.1 144 45.8
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 4.6e-26 121.7 145 46.2
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 7.8e-26 120.9 144 45.1
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.0e-25 120.6 144 45.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.0e-25 120.6 144 45.1
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.7e-25 119.8 136 52.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.7e-25 119.8 144 45.1
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.3e-25 119.4 144 45.1
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 2.3e-25 119.4 60 96.7
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 3.9e-25 118.6 144 44.4
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.1e-25 118.2 144 44.4
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.1e-25 118.2 145 48.3
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 6.6e-25 117.9 145 46.2
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 8.7e-25 117.5 144 44.4
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.1e-24 117.1 144 45.1
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.1e-24 117.1 144 45.1
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.1e-24 117.1 144 45.1
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.1e-24 117.1 144 45.1
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.1e-24 117.1 144 46.5
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.9e-24 116.3 144 45.8
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.3e-24 115.5 144 44.4
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.3e-24 115.5 144 43.1
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.3e-24 115.2 144 45.1
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 4.3e-24 115.2 144 45.1
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 5.6e-24 114.8 144 42.4
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 7.3e-24 114.4 145 42.8
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.6e-24 114.0 144 44.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 9.6e-24 114.0 144 41.0
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.2e-23 113.6 144 41.7
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.6e-23 113.2 144 43.1
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.6e-23 113.2 144 44.4
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 2.1e-23 112.8 144 43.1
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.8e-23 112.5 144 43.8
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 4.7e-23 111.7 144 43.1
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 6.2e-23 111.3 146 45.2
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 6.2e-23 111.3 144 41.0
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 8.1e-23 110.9 145 44.1
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.4e-22 110.2 144 42.4
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 2.4e-22 109.4 144 42.4
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 2.4e-22 109.4 144 41.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 4.0e-22 108.6 144 41.7
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 4.0e-22 108.6 144 41.7
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 5.2e-22 108.2 146 43.2
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 5.2e-22 108.2 144 42.4
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 5.2e-22 108.2 145 42.1
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 5.2e-22 108.2 145 42.1
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.0e-22 107.5 144 40.3
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.0e-21 106.3 144 40.3
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.4e-21 105.5 151 41.1
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.3e-20 103.6 144 41.7
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-20 103.6 117 47.9
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.3e-20 103.6 129 45.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 2.9e-20 102.4 117 47.0
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.8e-20 102.1 146 41.1
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 6.4e-20 101.3 145 40.7
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.4e-19 100.1 144 40.3
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.9e-19 99.8 149 38.9
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 2.4e-19 99.4 130 43.1
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 3.2e-19 99.0 144 38.2
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 4.2e-19 98.6 145 37.9
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 7.1e-19 97.8 118 44.9
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 7.1e-19 97.8 145 39.3
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 9.3e-19 97.4 130 42.3
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.2e-18 97.1 141 42.6
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.6e-18 96.7 145 37.2
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.3e-17 93.6 145 37.2
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.7e-17 93.2 117 41.0
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.7e-17 93.2 149 37.6
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 3.0e-17 92.4 139 36.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 3.9e-17 92.0 121 41.3
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 5.1e-17 91.7 52 86.5
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 6.6e-17 91.3 76 60.5
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 2.5e-16 89.4 117 42.7
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 4.3e-16 88.6 145 37.2
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.1e-14 84.0 73 57.5
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.4e-14 82.8 71 57.7
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 4.5e-13 78.6 141 36.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 2.2e-12 76.3 144 34.0
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 6.4e-12 74.7 144 34.7
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.1e-10 69.7 99 38.4
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 7.9e-10 67.8 143 30.8
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 7.9e-10 67.8 101 37.6
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 3.9e-09 65.5 144 34.0
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.9e-08 63.2 64 56.2
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.1e-06 55.8 124 32.3


User provided reference genes

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