Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 5.2e-40 167.2 78 100.0
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 3.3e-39 164.5 78 98.7
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.7e-35 152.1 77 90.9
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.7e-35 152.1 77 90.9
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.2e-34 147.5 77 88.3
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 5.5e-34 147.1 81 87.7
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 8.0e-33 143.3 77 87.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 8.0e-33 143.3 77 87.0
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 8.0e-33 143.3 76 86.8
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-32 142.9 74 89.2
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 3.0e-32 141.4 76 85.5
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.0e-32 141.4 77 84.4
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.0e-32 141.0 76 85.5
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 5.2e-32 140.6 77 83.1
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 8.8e-32 139.8 76 84.2
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-31 138.7 77 80.5
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-31 138.7 77 84.4
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.0e-31 138.7 77 80.5
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.6e-31 138.3 76 82.9
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 3.4e-31 137.9 77 80.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-31 137.9 77 80.5
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 3.4e-31 137.9 77 80.5
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 7.5e-31 136.7 77 80.5
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.4e-29 131.7 76 78.9
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 3.6e-25 117.9 76 68.4
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.7e-25 117.5 76 67.1
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 4.7e-25 117.5 76 68.4
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 8.0e-25 116.7 76 68.4
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-24 116.3 74 68.9
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-24 116.3 74 70.3
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.0e-24 116.3 74 70.3
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.0e-24 116.3 76 65.8
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.0e-24 116.3 74 70.3
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-24 115.5 74 68.9
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.8e-24 115.5 74 68.9
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.0e-24 114.8 76 67.1
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 3.0e-24 114.8 74 68.9
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-24 114.8 74 68.9
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 3.0e-24 114.8 76 65.8
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 4.0e-24 114.4 76 65.8
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.2e-24 114.0 76 68.4
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 6.8e-24 113.6 74 66.2
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 6.8e-24 113.6 76 65.8
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 6.8e-24 113.6 76 64.5
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 8.8e-24 113.2 76 65.8
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.2e-23 112.8 76 63.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-23 112.8 76 63.2
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.2e-23 112.8 76 65.8
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.2e-23 112.8 77 64.9
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.2e-23 112.8 76 65.8
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.0e-23 112.1 76 64.5
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 2.6e-23 111.7 74 66.2
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.6e-23 111.7 76 63.2
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.6e-23 111.7 76 64.5
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 2.6e-23 111.7 76 64.5
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.4e-23 111.3 76 71.1
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-23 111.3 74 67.6
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 3.4e-23 111.3 74 67.6
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 3.4e-23 111.3 76 65.8
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 3.4e-23 111.3 76 63.2
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.4e-23 111.3 76 64.5
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.4e-23 110.9 76 61.8
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.7e-23 110.5 74 68.9
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 7.5e-23 110.2 76 64.5
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 9.8e-23 109.8 74 64.9
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 9.8e-23 109.8 76 61.8
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 9.8e-23 109.8 76 60.5
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 9.8e-23 109.8 76 63.2
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.3e-22 109.4 76 64.5
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.3e-22 109.4 76 63.2
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.7e-22 109.0 76 63.2
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.2e-22 108.6 77 59.7
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.8e-22 108.2 76 63.2
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.8e-22 108.2 73 64.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.7e-22 107.8 57 84.2
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.7e-22 107.8 77 62.3
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 3.7e-22 107.8 77 61.0
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 3.7e-22 107.8 76 60.5
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 3.7e-22 107.8 77 63.6
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 6.3e-22 107.1 76 61.8
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 6.3e-22 107.1 76 59.2
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 8.3e-22 106.7 76 61.8
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.1e-21 106.3 77 59.7
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.1e-21 106.3 76 59.2
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.4e-21 105.9 76 59.2
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.4e-21 105.9 76 63.2
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 1.4e-21 105.9 76 60.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.8e-21 105.5 76 64.5
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.8e-21 105.5 76 64.5
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.8e-21 105.5 76 57.9
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 2.4e-21 105.1 76 60.5
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 2.4e-21 105.1 80 58.8
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.4e-21 105.1 76 59.2
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 4.1e-21 104.4 76 61.8
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 4.1e-21 104.4 76 60.5
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 5.4e-21 104.0 77 59.7
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 5.4e-21 104.0 76 59.2
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 7.0e-21 103.6 76 56.6
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 7.0e-21 103.6 77 57.1
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 9.1e-21 103.2 76 59.2
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 9.1e-21 103.2 77 59.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.2e-20 102.8 76 60.5
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.2e-20 102.8 76 60.5
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.2e-20 102.8 76 59.2
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.0e-20 102.1 76 65.8
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.0e-20 102.1 76 57.9
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.0e-20 102.1 76 57.9
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.7e-20 101.7 74 60.8
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 4.5e-20 100.9 69 62.3
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 4.5e-20 100.9 76 56.6
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 4.5e-20 100.9 77 55.8
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.9e-20 100.5 76 56.6
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 7.7e-20 100.1 76 57.9
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.0e-19 99.8 77 55.8
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.0e-19 99.8 77 55.8
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-19 99.4 76 55.3
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-19 99.4 46 97.8
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.3e-19 99.4 77 57.1
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 1.3e-19 99.4 77 57.1
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 1.7e-19 99.0 76 57.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.3e-19 98.6 76 56.6
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.5e-18 95.9 76 53.9
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.9e-18 95.5 76 53.9
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.8e-17 91.7 67 58.2
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 6.8e-16 87.0 121 40.5
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 4.9e-14 80.9 77 49.4
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.1e-13 79.7 77 45.5
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 4.1e-13 77.8 56 57.1
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-13 77.8 45 82.2
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-13 77.8 45 82.2
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 7.0e-13 77.0 82 50.0
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 7.0e-13 77.0 82 50.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.3e-11 72.8 76 43.4
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.6e-09 65.9 44 65.9
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.8e-09 65.1 45 64.4
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 6.2e-09 63.9 76 43.4
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 8.9e-08 60.1 43 60.5
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.2e-07 59.7 43 58.1
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 2.0e-07 58.9 43 58.1
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-06 55.8 32 68.8
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-06 55.8 32 68.8
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.7e-06 55.8 32 68.8


User provided reference genes

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