Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.3e-103 379.8 193 100.0
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 6.9e-102 374.0 193 99.5
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 7.6e-101 370.5 193 96.9
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 2.1e-95 352.4 180 98.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.5e-93 344.7 180 96.1
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.6e-90 336.3 193 90.2
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.3e-88 328.2 196 88.3
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.3e-84 316.6 193 86.5
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.2e-84 315.8 194 86.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.8e-84 315.1 194 84.5
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 3.8e-84 315.1 194 86.1
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.1e-83 313.5 193 86.0
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 9.3e-83 310.5 194 84.5
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 9.3e-83 310.5 194 84.5
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.5e-82 308.5 189 85.2
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.1e-73 278.1 192 75.5
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 6.7e-73 277.7 192 73.4
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.4e-62 242.7 156 83.3
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-61 240.4 194 73.2
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 5.0e-60 235.0 183 70.5
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 2.0e-53 213.0 124 90.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 8.8e-49 197.6 194 56.2
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.3e-47 193.7 176 59.1
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.7e-47 193.4 193 54.9
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 8.3e-47 191.0 184 56.5
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.1e-46 190.7 184 56.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.8e-46 189.9 195 54.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.8e-46 189.9 181 55.8
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.8e-46 189.9 185 55.7
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 5.3e-46 188.3 191 56.5
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.3e-46 188.3 186 55.4
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 5.3e-46 188.3 177 57.6
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.2e-45 187.2 173 56.6
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 3.5e-45 185.7 177 54.2
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 4.5e-45 185.3 176 55.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 4.5e-45 185.3 176 57.4
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 5.9e-45 184.9 176 56.2
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 7.7e-45 184.5 184 53.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 7.7e-45 184.5 167 59.3
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.0e-44 184.1 177 55.9
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.3e-44 183.7 182 54.4
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.7e-44 183.3 183 55.2
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.2e-44 183.0 194 52.1
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.2e-44 183.0 175 56.0
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 2.2e-44 183.0 174 54.6
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.8e-44 182.2 194 53.6
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 5.0e-44 181.8 175 57.1
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 6.5e-44 181.4 177 54.8
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 8.5e-44 181.0 174 52.9
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.5e-43 180.3 191 53.9
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.5e-43 180.3 178 54.5
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.9e-43 179.9 176 55.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.9e-43 179.9 184 54.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.5e-43 179.5 184 53.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.5e-43 179.5 172 56.4
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.2e-43 179.1 172 56.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 3.2e-43 179.1 179 55.3
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 9.4e-43 177.6 175 54.3
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 9.4e-43 177.6 179 53.1
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 9.4e-43 177.6 186 53.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.6e-42 176.8 180 53.3
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.6e-42 176.8 178 53.4
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.1e-42 176.4 173 53.8
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 3.6e-42 175.6 185 52.4
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 4.7e-42 175.3 178 53.4
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 4.7e-42 175.3 177 52.0
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 6.1e-42 174.9 173 54.9
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.0e-42 174.5 176 54.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 8.0e-42 174.5 166 57.2
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.0e-41 174.1 173 53.2
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.4e-41 173.7 175 53.1
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.4e-41 173.7 184 52.2
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.4e-41 173.7 173 52.6
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.3e-41 172.9 191 53.4
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.3e-41 172.9 180 51.7
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 3.0e-41 172.6 182 52.2
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 3.0e-41 172.6 188 52.7
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 5.2e-41 171.8 180 52.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 6.8e-41 171.4 173 52.6
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.2e-40 170.6 173 52.6
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.2e-40 170.6 175 52.0
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.0e-40 169.9 191 52.4
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.6e-40 169.5 173 52.6
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 2.6e-40 169.5 200 49.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.8e-40 167.5 191 51.8
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 9.8e-40 167.5 171 53.2
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.2e-39 166.4 175 52.6
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.2e-39 166.4 191 51.8
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-38 164.1 182 49.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.4e-38 163.7 184 52.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-38 162.9 172 50.6
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.1e-38 162.5 191 49.7
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 4.1e-38 162.2 134 62.7
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 5.4e-38 161.8 193 49.2
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 7.0e-38 161.4 191 50.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 9.1e-38 161.0 191 50.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-37 160.6 205 48.3
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-37 159.5 172 49.4
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 3.5e-37 159.1 213 44.6
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.8e-36 155.6 193 47.2
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 5.0e-36 155.2 134 59.7
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.6e-36 154.8 165 50.9
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 8.6e-36 154.5 187 47.6
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 2.5e-35 152.9 238 40.3
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.3e-35 152.5 127 62.2
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 5.5e-35 151.8 178 49.4
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 9.5e-35 151.0 139 59.0
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 9.5e-35 151.0 173 49.1
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.8e-34 149.4 163 49.7
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 8.0e-34 147.9 126 61.1
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 8.0e-34 147.9 164 51.2
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 4.4e-32 142.1 172 48.8
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 9.8e-32 141.0 188 44.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.8e-31 139.4 110 66.4
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 3.7e-31 139.0 123 59.3
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.1e-30 137.5 188 44.1
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.8e-30 136.7 188 44.1
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 5.4e-30 135.2 166 48.8
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 9.2e-30 134.4 176 43.2
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-29 133.7 145 50.3
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.3e-27 125.9 162 42.6
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.6e-26 122.5 195 41.0
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.1e-25 119.4 134 50.0
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-24 116.7 161 42.9
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 3.7e-23 112.5 139 48.9
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 4.9e-23 112.1 128 49.2
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 6.4e-23 111.7 164 43.3
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 5.4e-22 108.6 132 47.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 5.4e-22 108.6 126 49.2
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.0e-21 105.1 129 47.3
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.7e-20 103.6 137 41.6
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.6e-19 98.6 129 45.0
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 8.9e-17 91.3 157 40.8
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 2.0e-16 90.1 183 33.3
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 9.8e-16 87.8 125 38.4
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 9.8e-16 87.8 175 33.7
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.7e-15 87.0 85 55.3
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.5e-11 73.2 60 58.3
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 7.3e-11 71.6 50 68.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 7.3e-11 71.6 50 68.0
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-10 70.1 53 64.2
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.1e-10 70.1 54 63.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.7e-10 68.9 50 66.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 8.1e-10 68.2 60 55.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 8.9e-09 64.7 93 36.6
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 5.8e-08 62.0 125 36.8
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 3.7e-07 59.3 41 65.9


User provided reference genes

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