Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 1.6e-189 666.0 357 100.0
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 3.1e-188 661.8 357 99.4
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 3.3e-182 641.7 357 95.8
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 8.4e-170 600.5 357 90.2
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.2e-168 596.7 360 90.0
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 3.2e-161 572.0 361 87.8
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.6e-152 541.6 359 78.3
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 5.1e-151 538.1 361 78.7
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 5.1e-151 538.1 360 80.0
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.6e-149 533.1 361 79.8
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 6.4e-146 521.2 360 75.6
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.3e-143 513.5 360 78.3
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 1.5e-142 510.0 370 71.6
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 4.8e-117 425.2 366 62.0
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.1e-116 424.1 356 63.8
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 4.1e-116 422.2 358 62.0
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.5e-115 420.2 362 62.2
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.5e-113 412.9 359 60.2
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.2e-112 410.6 361 60.4
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.7e-106 390.2 312 65.1
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 4.2e-105 385.6 301 68.8
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 2.7e-104 382.9 349 59.3
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.0e-103 380.9 355 56.1
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 5.2e-103 378.6 344 59.0
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.2e-102 377.5 341 61.0
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.5e-102 377.1 231 87.9
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.2e-101 373.2 353 58.1
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 3.1e-100 369.4 369 53.1
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 1.6e-99 367.1 365 52.9
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 3.5e-99 365.9 368 52.7
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 7.7e-99 364.8 365 56.7
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 6.5e-98 361.7 365 52.3
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 9.4e-97 357.8 369 52.0
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 2.1e-96 356.7 361 51.2
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 2.7e-96 356.3 369 51.5
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.8e-95 353.6 366 52.2
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.3e-95 353.2 360 50.3
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 1.5e-94 350.5 369 50.9
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 7.5e-94 348.2 360 52.2
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 1.7e-93 347.1 366 51.6
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 2.2e-93 346.7 368 49.5
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 2.2e-93 346.7 360 51.9
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 3.7e-93 345.9 367 51.2
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 4.8e-93 345.5 363 49.9
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.3e-93 345.1 363 49.9
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.3e-93 345.1 363 49.9
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 6.3e-93 345.1 362 50.3
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 8.3e-93 344.7 366 49.5
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.4e-92 344.0 368 49.5
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.8e-92 343.6 363 49.9
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 1.8e-92 343.6 366 50.0
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.1e-92 342.4 344 51.7
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 7.0e-92 341.7 368 48.6
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 7.0e-92 341.7 357 51.0
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 9.1e-92 341.3 369 49.1
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.2e-91 340.9 355 50.1
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.2e-91 340.9 364 49.2
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.6e-91 340.5 371 50.7
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 2.0e-91 340.1 366 49.7
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 2.7e-91 339.7 368 49.5
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 5.9e-91 338.6 363 51.5
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.9e-90 336.3 344 51.2
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 8.5e-90 334.7 366 50.5
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 8.5e-90 334.7 360 49.4
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.1e-89 334.3 356 52.0
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 1.9e-89 333.6 367 49.6
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 3.2e-89 332.8 374 50.3
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 3.2e-89 332.8 354 50.0
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 3.2e-89 332.8 363 51.0
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 7.2e-89 331.6 363 51.0
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.6e-88 330.5 370 48.6
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 3.6e-88 329.3 369 49.1
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 8.0e-88 328.2 370 49.2
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.4e-87 327.4 408 44.9
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 5.2e-87 325.5 366 51.4
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 8.8e-87 324.7 373 48.8
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.5e-86 323.9 343 51.0
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 1.5e-86 323.9 363 51.5
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 1.5e-86 323.9 365 48.5
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.6e-83 313.9 369 48.0
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 5.9e-83 312.0 271 63.5
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 7.8e-83 311.6 324 51.9
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 7.8e-83 311.6 367 46.9
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.3e-82 310.8 351 46.4
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.3e-82 310.8 363 46.3
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 2.3e-82 310.1 369 47.7
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.5e-81 306.6 367 47.1
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 2.5e-81 306.6 367 50.1
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.2e-80 304.3 413 43.3
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 1.2e-80 304.3 349 48.4
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.7e-80 302.4 368 46.7
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 8.0e-80 301.6 360 44.4
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.4e-79 300.8 370 45.7
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.8e-79 300.4 355 45.6
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.0e-79 299.7 431 41.3
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 4.0e-79 299.3 357 46.2
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 5.7e-78 295.4 376 44.1
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 5.7e-78 295.4 370 49.2
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 9.8e-78 294.7 371 49.9
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 2.2e-77 293.5 370 44.3
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 2.2e-77 293.5 281 54.4
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 3.7e-77 292.7 358 44.4
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 6.4e-77 292.0 305 51.5
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 8.3e-77 291.6 369 44.7
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.1e-76 291.2 325 48.9
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.1e-76 291.2 349 45.6
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.6e-75 287.3 389 41.1
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 1.9e-73 280.4 341 46.6
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.1e-72 276.9 362 43.9
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.1e-72 276.9 294 50.3
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.2e-70 271.2 357 41.5
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 2.6e-70 270.0 284 51.4
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 4.4e-70 269.2 300 48.3
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 5.8e-70 268.9 308 49.0
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 3.9e-66 256.1 351 42.2
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 3.3e-65 253.1 370 39.7
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 2.1e-64 250.4 363 38.0
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 3.7e-61 239.6 378 37.0
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.6e-56 224.2 238 50.0
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 4.0e-55 219.5 245 49.4
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 5.6e-49 199.1 237 48.1
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.2e-48 198.0 354 35.0
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.4e-47 194.5 180 57.2
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.6e-46 190.3 234 47.9
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 7.1e-44 182.2 325 36.0
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 2.1e-43 180.6 348 35.3
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 2.4e-39 167.2 274 38.7
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.4e-38 163.3 239 44.4
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 7.6e-38 162.2 127 65.4
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 4.6e-35 152.9 349 30.1
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 1.9e-33 147.5 302 32.8
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.7e-29 134.4 451 25.1
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 3.4e-22 110.2 364 26.6
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.8e-21 106.7 162 35.2
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 7.1e-20 102.4 175 40.0
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 4.6e-19 99.8 129 41.1
PGR142G1573 Punica granatum HOM05D005473 ORTHO05D006543 1.0e-10 72.0 230 25.7
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 3.0e-10 70.5 281 24.2
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 5.7e-09 66.2 147 30.6


User provided reference genes

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