Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 3.9e-53 211.5 126 100.0
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 3.9e-53 211.5 126 100.0
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 2.3e-50 202.2 126 95.2
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 1.6e-46 189.5 126 92.1
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 6.0e-46 187.6 126 91.3
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 2.1e-43 179.1 123 90.2
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 9.8e-41 170.2 123 83.7
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 9.8e-41 170.2 123 83.7
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 9.8e-41 170.2 123 83.7
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 9.8e-41 170.2 119 89.1
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 2.2e-40 169.1 123 82.1
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-39 166.4 123 82.9
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 9.5e-36 153.7 117 81.2
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 1.2e-33 146.7 127 75.6
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 5.8e-33 144.4 126 74.6
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 3.7e-32 141.7 126 73.0
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 9.2e-31 137.1 123 69.1
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 7.3e-28 127.5 123 69.1
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 1.1e-20 103.6 126 57.9
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 1.3e-11 73.6 133 48.9
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 2.1e-11 72.8 77 55.8
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 2.1e-11 72.8 111 52.3
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 2.1e-11 72.8 111 52.3
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 2.8e-11 72.4 82 63.4
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 2.8e-11 72.4 82 67.1
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 4.8e-11 71.6 77 64.9
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 6.2e-11 71.2 77 53.2
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 1.1e-10 70.5 77 66.2
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 3.1e-10 68.9 87 58.6
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 5.3e-10 68.2 87 58.6
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 5.3e-10 68.2 87 57.5
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 9.0e-10 67.4 82 58.5
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 9.0e-10 67.4 82 58.5
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.2e-09 67.0 77 62.3
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.2e-09 67.0 77 62.3
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 1.5e-09 66.6 87 59.8
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 1.5e-09 66.6 84 60.7
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 2.0e-09 66.2 80 66.2
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 2.0e-09 66.2 82 61.0
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 2.0e-09 66.2 132 51.5
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 3.4e-09 65.5 85 55.3
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 4.5e-09 65.1 80 65.0
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 5.8e-09 64.7 82 67.1
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 5.8e-09 64.7 121 49.6
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 5.8e-09 64.7 82 58.5
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 7.6e-09 64.3 112 52.7
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 7.6e-09 64.3 122 49.2
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 9.9e-09 63.9 87 56.3
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 9.9e-09 63.9 139 48.2
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.3e-08 63.5 77 51.9
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 1.7e-08 63.2 77 51.9
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 2.2e-08 62.8 85 54.1
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 2.2e-08 62.8 88 61.4
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 2.9e-08 62.4 112 56.2
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 2.9e-08 62.4 121 49.6
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 3.8e-08 62.0 77 58.4
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 3.8e-08 62.0 110 43.6
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 3.8e-08 62.0 82 58.5
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 4.9e-08 61.6 80 63.8
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 8.4e-08 60.8 123 46.3
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 8.4e-08 60.8 79 58.2
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 8.4e-08 60.8 77 63.6
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 1.1e-07 60.5 85 58.8
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 1.4e-07 60.1 82 65.9
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.9e-07 59.7 109 45.9
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 1.9e-07 59.7 80 61.2
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 1.9e-07 59.7 103 52.4
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 1.9e-07 59.7 84 46.4
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 2.4e-07 59.3 99 39.4
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 2.4e-07 59.3 79 58.2
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 2.4e-07 59.3 134 43.3
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 3.2e-07 58.9 125 41.6
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 3.2e-07 58.9 76 57.9
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 4.2e-07 58.5 119 46.2
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 4.2e-07 58.5 77 59.7
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 4.2e-07 58.5 112 48.2
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 7.1e-07 57.8 105 46.7
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 7.1e-07 57.8 78 59.0
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 9.3e-07 57.4 97 49.5
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 1.2e-06 57.0 83 60.2
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 1.2e-06 57.0 128 39.8
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 1.6e-06 56.6 35 82.9
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 1.6e-06 56.6 120 50.0
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 2.1e-06 56.2 120 49.2
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 2.7e-06 55.8 123 43.9
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 2.7e-06 55.8 106 40.6
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 6.0e-06 54.7 77 61.0
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 7.9e-06 54.3 127 46.5
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 7.9e-06 54.3 106 50.0
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 7.9e-06 54.3 108 38.0


User provided reference genes

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