Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30592H Brassica oleracea HOM05D006890 ORTHO05D000421 1.1e-65 253.1 123 100.0
C05p18950 Brassica napus HOM05D006890 ORTHO05D000421 8.4e-61 236.9 119 95.8
A03p13360 Brassica napus HOM05D006890 ORTHO05D000421 6.2e-56 220.7 121 89.3
A09p62230 Brassica napus HOM05D006890 ORTHO05D000421 6.2e-56 220.7 121 89.3
C03p65080 Brassica napus HOM05D006890 ORTHO05D009907 3.1e-55 218.4 121 87.6
BcaC03g16942 Brassica carinata HOM05D006890 ORTHO05D000421 1.5e-54 216.1 119 89.9
BolC6t38447H Brassica oleracea HOM05D000621 ORTHO05D000421 1.1e-52 209.9 113 91.2
C05p60060 Brassica napus HOM05D006890 ORTHO05D009907 3.0e-50 201.8 126 78.6
C09p50410 Brassica napus HOM05D006890 ORTHO05D009907 8.7e-50 200.3 108 89.8
C04p13170 Brassica napus HOM05D006890 ORTHO05D009907 1.3e-48 196.4 110 88.2
C09p53280 Brassica napus HOM05D003348 ORTHO05D011028 2.8e-48 195.3 119 79.0
A05p28530 Brassica napus HOM05D006890 ORTHO05D009907 6.2e-48 194.1 111 88.3
A04p08270 Brassica napus HOM05D006890 ORTHO05D009907 5.8e-46 187.6 116 82.8
BolC7t40800H Brassica oleracea HOM05D006890 ORTHO05D009907 3.2e-44 181.8 110 83.6
C09p44090 Brassica napus HOM05D000621 ORTHO05D000421 9.3e-44 180.3 105 85.7
BolC5t34660H Brassica oleracea HOM05D006890 ORTHO05D009907 1.2e-43 179.9 115 77.4
BcaC04g20416 Brassica carinata HOM05D006890 ORTHO05D009907 1.6e-43 179.5 110 80.9
C09p43780 Brassica napus HOM05D006890 ORTHO05D009907 3.9e-42 174.9 128 72.7
BcaC02g10516 Brassica carinata HOM05D006890 ORTHO05D009907 1.1e-41 173.3 119 73.1
C02p47770 Brassica napus HOM05D006890 ORTHO05D009907 1.9e-41 172.6 110 81.8
BolC2t10812H Brassica oleracea HOM05D006890 ORTHO05D009907 1.9e-41 172.6 110 81.8
BolC9t57262H Brassica oleracea HOM05D006890 ORTHO05D009907 4.3e-41 171.4 128 71.1
BcaC05g25944 Brassica carinata HOM05D006890 ORTHO05D009907 7.6e-38 160.6 83 95.2
BraA06t26265Z Brassica rapa HOM05D006890 ORTHO05D009907 1.0e-34 150.2 86 88.4
BcaC04g20095 Brassica carinata HOM05D006890 ORTHO05D000421 4.3e-33 144.8 119 63.0
BcaB05g22914 Brassica carinata HOM05D006890 ORTHO05D000421 4.8e-32 141.4 116 56.9
BcaC06g36006 Brassica carinata HOM05D006890 ORTHO05D009907 1.5e-30 136.3 74 90.5
C01p27980 Brassica napus HOM05D006890 ORTHO05D009907 2.0e-30 136.0 78 87.2
BcaB08g35588 Brassica carinata HOM05D006890 ORTHO05D000421 7.1e-28 127.5 121 52.1
BcaC02g11614 Brassica carinata HOM05D006890 ORTHO05D009907 3.0e-26 122.1 71 85.9
BcaC04g19717 Brassica carinata HOM05D006890 ORTHO05D009907 1.1e-25 120.2 95 67.4
BcaC06g36530 Brassica carinata HOM05D006890 ORTHO05D009907 1.1e-25 120.2 69 87.0
A03p49030 Brassica napus HOM05D000621 ORTHO05D000421 1.9e-25 119.4 62 90.3
A03p65960 Brassica napus HOM05D006890 ORTHO05D000421 1.6e-24 116.3 66 86.4
BraA03t15648Z Brassica rapa HOM05D006890 ORTHO05D000421 1.6e-24 116.3 66 86.4
BolC9t57629H Brassica oleracea HOM05D000621 ORTHO05D000421 2.2e-24 115.9 63 87.3
C07p04060 Brassica napus HOM05D006890 ORTHO05D009907 2.8e-24 115.5 119 52.9
BolC7t41317H Brassica oleracea HOM05D006890 ORTHO05D000421 2.8e-24 115.5 76 75.0
C07p09090 Brassica napus HOM05D006890 ORTHO05D009907 4.8e-24 114.8 76 75.0
C07p03240 Brassica napus HOM05D006890 ORTHO05D009907 9.0e-23 110.5 106 56.6
BolC9t57611H Brassica oleracea HOM05D000621 ORTHO05D000421 5.9e-22 107.8 63 85.7
BcaB01g01117 Brassica carinata HOM05D006890 ORTHO05D009907 4.6e-19 98.2 116 46.6
Thhalv10001340m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 1.8e-18 96.3 119 42.0
BcaB01g00357 Brassica carinata HOM05D006890 ORTHO05D009907 3.0e-18 95.5 116 46.6
BcaB06g29457 Brassica carinata HOM05D000621 ORTHO05D000421 5.1e-18 94.7 120 40.8
BcaB07g33924 Brassica carinata HOM05D006890 ORTHO05D009907 1.9e-17 92.8 79 57.0
BcaB08g34800 Brassica carinata HOM05D006890 ORTHO05D000421 3.3e-17 92.0 116 45.7
BcaC01g00112 Brassica carinata HOM05D006890 ORTHO05D009907 3.3e-17 92.0 47 87.2
CARHR142620 Cardamine hirsuta HOM05D000621 ORTHO05D000421 4.3e-17 91.7 112 42.0
CARHR142610 Cardamine hirsuta HOM05D000621 ORTHO05D000421 7.4e-17 90.9 113 38.9
Carub.0004s2996 Capsella rubella HOM05D000621 ORTHO05D000421 4.8e-16 88.2 113 34.5
BNapus_Darmor_BZH_scaffold_118p00180 Brassica napus HOM05D000621 ORTHO05D000421 3.1e-15 85.5 119 34.5
Thhalv10001344m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 4.1e-15 85.1 113 36.3
AT1G03300 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 2.0e-14 82.8 113 37.2
AT2G47230 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 2.0e-14 82.8 113 33.6
AL1G12810 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 2.6e-14 82.4 119 37.8
Carub.0001s0241 Capsella rubella HOM05D000621 ORTHO05D000421 5.9e-14 81.3 113 37.2
Carub.0001s2450 Capsella rubella HOM05D000621 ORTHO05D000421 1.3e-13 80.1 113 36.3
AL4G46780 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.7e-13 79.7 113 32.7
CARHR005930 Cardamine hirsuta HOM05D000621 ORTHO05D000421 1.7e-13 79.7 113 38.1
BolC8t46861H Brassica oleracea HOM05D003348 ORTHO05D010016 2.2e-13 79.3 38 86.8
BcaB02g08793 Brassica carinata HOM05D000621 ORTHO05D000421 2.9e-13 79.0 113 35.4
CARHR002610 Cardamine hirsuta HOM05D000621 ORTHO05D000421 2.9e-13 79.0 115 36.5
CARHR025430 Cardamine hirsuta HOM05D000621 ORTHO05D000421 2.9e-13 79.0 120 36.7
C04p27980 Brassica napus HOM05D006890 ORTHO05D000421 3.8e-13 78.6 38 89.5
BolC4t24343H Brassica oleracea HOM05D000621 ORTHO05D000421 3.8e-13 78.6 38 89.5
Sp3g05300 Schrenkiella parvula HOM05D000621 ORTHO05D000421 5.0e-13 78.2 113 36.3
C06p29210 Brassica napus HOM05D006890 ORTHO05D009907 6.5e-13 77.8 62 62.9
BraA06t26264Z Brassica rapa HOM05D006890 ORTHO05D000421 1.1e-12 77.0 36 91.7
AT1G26540 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 1.9e-12 76.3 113 33.6
BolC9t57897H Brassica oleracea HOM05D003348 ORTHO05D010016 1.9e-12 76.3 38 84.2
BcaC05g29812 Brassica carinata HOM05D000621 ORTHO05D000421 2.5e-12 75.9 114 37.7
C05p60860 Brassica napus HOM05D000621 ORTHO05D000421 2.5e-12 75.9 114 37.7
BolC5t34743H Brassica oleracea HOM05D000621 ORTHO05D000421 2.5e-12 75.9 114 37.7
BcaC05g29811 Brassica carinata HOM05D000621 ORTHO05D000421 4.2e-12 75.1 116 37.9
BolC6t38085H Brassica oleracea HOM05D006890 ORTHO05D009907 7.2e-12 74.3 62 59.7
AL1G39190 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 9.4e-12 73.9 115 35.7
BcaB01g02579 Brassica carinata HOM05D006890 ORTHO05D009907 1.6e-11 73.2 81 50.6
BcaB06g26696 Brassica carinata HOM05D006890 ORTHO05D000421 2.1e-11 72.8 36 86.1
BraA02t07651Z Brassica rapa HOM05D000621 ORTHO05D000421 2.1e-11 72.8 113 33.6
A05p41650 Brassica napus HOM05D000621 ORTHO05D000421 2.7e-11 72.4 114 36.8
BraA05t22885Z Brassica rapa HOM05D000621 ORTHO05D000421 2.7e-11 72.4 114 36.8
BolC9t58202H Brassica oleracea HOM05D003348 ORTHO05D011028 4.7e-11 71.6 36 86.1
BcaB06g28181 Brassica carinata HOM05D006890 ORTHO05D009907 1.0e-10 70.5 53 58.5
Thhalv10020194m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 1.0e-10 70.5 114 36.8
A08p10370 Brassica napus HOM05D000621 ORTHO05D000421 1.4e-10 70.1 113 32.7
BraA08t33037Z Brassica rapa HOM05D000621 ORTHO05D000421 1.8e-10 69.7 113 32.7
Duzib138G1699 Durio zibethinus HOM05D000621 ORTHO05D000421 1.8e-10 69.7 117 35.9
AT1G11420 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 3.0e-10 68.9 113 33.6
Sabra02G0163600 Salix brachista HOM05D000621 ORTHO05D000421 3.0e-10 68.9 118 34.7
Duzib211G0322 Durio zibethinus HOM05D000621 ORTHO05D000421 3.9e-10 68.6 112 33.9
Gohir.D08G141200 Gossypium hirsutum HOM05D000621 ORTHO05D000421 3.9e-10 68.6 114 35.1
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 5.1e-10 68.2 114 35.1
BolC4t21700H Brassica oleracea HOM05D000621 ORTHO05D000421 6.7e-10 67.8 114 35.1
Gohir.A08G120300 Gossypium hirsutum HOM05D000621 ORTHO05D000421 8.8e-10 67.4 114 34.2
Gorai.004G145200 Gossypium raimondii HOM05D000621 ORTHO05D000421 8.8e-10 67.4 114 34.2
Thecc.01G318600 Theobroma cacao HOM05D000621 ORTHO05D000421 8.8e-10 67.4 112 34.8
A01p41220 Brassica napus HOM05D000621 ORTHO05D000421 1.1e-09 67.0 115 33.0
BNapus_Darmor_BZH_scaffold_78p00490 Brassica napus HOM05D000621 ORTHO05D000421 1.1e-09 67.0 115 33.0
Potri.002G192300 Populus trichocarpa HOM05D000621 ORTHO05D000421 1.1e-09 67.0 114 35.1
Potri.014G117800 Populus trichocarpa HOM05D000621 ORTHO05D000421 2.0e-09 66.2 114 36.8
THA.LOC104802141 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 2.6e-09 65.9 112 33.0
BcaC09g47891 Brassica carinata HOM05D000621 ORTHO05D000421 9.7e-09 63.9 121 33.1
BolC1t05625H Brassica oleracea HOM05D000621 ORTHO05D000421 9.7e-09 63.9 121 33.1
BcaC05g29362 Brassica carinata HOM05D000621 ORTHO05D000421 2.8e-08 62.4 104 29.8
BolC5t34311H Brassica oleracea HOM05D000621 ORTHO05D000421 2.8e-08 62.4 104 29.8
BcaC05g30032 Brassica carinata HOM05D000621 ORTHO05D000421 3.7e-08 62.0 115 33.0
Atru.chr5.946 Acer truncatum HOM05D000621 ORTHO05D000421 4.8e-08 61.6 111 32.4
Duzib133G0686 Durio zibethinus HOM05D000621 ORTHO05D000421 4.8e-08 61.6 112 32.1
BcaC08g45318 Brassica carinata HOM05D006890 ORTHO05D009907 6.3e-08 61.2 35 88.6
C04p00670 Brassica napus HOM05D000621 ORTHO05D000421 6.3e-08 61.2 114 32.5
Haze_05080 Corylus avellana HOM05D000621 ORTHO05D000421 1.1e-07 60.5 111 33.3
Thhalv10027025m.g Eutrema salsugineum HOM05D000621 ORTHO05D000421 1.1e-07 60.5 94 33.0
GSVIVG01028157001 Vitis vinifera HOM05D000621 ORTHO05D000421 1.4e-07 60.1 112 33.0
BcaC02g12582 Brassica carinata HOM05D000621 ORTHO05D000421 1.8e-07 59.7 37 62.2
C04p00660 Brassica napus HOM05D000621 ORTHO05D000421 1.8e-07 59.7 37 62.2
BolC4t21699H Brassica oleracea HOM05D000621 ORTHO05D000421 1.8e-07 59.7 37 62.2
BraA01t04442Z Brassica rapa HOM05D000621 ORTHO05D000421 1.8e-07 59.7 115 32.2
CANSAT80G2825 Cannabis sativa HOM05D000621 ORTHO05D000421 1.8e-07 59.7 113 36.3
CiPaw.08G086900 Carya illinoinensis HOM05D000621 ORTHO05D000421 2.4e-07 59.3 115 33.9
BNapus_Darmor_BZH_scaffold_118p00170 Brassica napus HOM05D000621 ORTHO05D000421 3.1e-07 58.9 115 32.2
Manes.01G230800 Manihot esculenta HOM05D000621 ORTHO05D000421 3.1e-07 58.9 112 36.6
THA.LOC104817448 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 3.1e-07 58.9 112 33.0
BcaB06g26669 Brassica carinata HOM05D006890 ORTHO05D009907 4.1e-07 58.5 36 63.9
BraA05t19058Z Brassica rapa HOM05D000621 ORTHO05D000421 4.1e-07 58.5 37 62.2
AL6G35070 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 7.0e-07 57.8 124 29.0
BolC7t40723H Brassica oleracea HOM05D003348 ORTHO05D040102 7.0e-07 57.8 29 82.8
A05p00610 Brassica napus HOM05D000621 ORTHO05D000421 9.1e-07 57.4 37 62.2
AT5G23800 Arabidopsis thaliana HOM05D000621 ORTHO05D000421 1.2e-06 57.0 124 30.6
BcaB02g08792 Brassica carinata HOM05D000621 ORTHO05D000421 1.2e-06 57.0 37 62.2
AL1G22510 Arabidopsis lyrata HOM05D000621 ORTHO05D000421 1.5e-06 56.6 113 30.1
C05p56470 Brassica napus HOM05D000621 ORTHO05D000421 1.5e-06 56.6 74 33.8
CSS0010554 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 1.5e-06 56.6 113 31.0
Ciclev10018775m.g Citrus clementina HOM05D000621 ORTHO05D000421 1.5e-06 56.6 116 33.6
Cfa005755 Carpinus fangiana HOM05D000621 ORTHO05D000421 2.6e-06 55.8 111 31.5
EL10As5g23608 Beta vulgaris HOM05D000621 ORTHO05D000421 3.4e-06 55.5 113 32.7
C09p53230 Brassica napus HOM05D006890 ORTHO05D000421 3.4e-06 55.5 44 70.5
BolC9t58198H Brassica oleracea HOM05D006890 ORTHO05D000421 3.4e-06 55.5 44 70.5
CSS0001187 Camellia sinensis var. sinensis HOM05D000621 ORTHO05D000421 3.4e-06 55.5 113 31.9
QL12p018838 Quercus lobata HOM05D000621 ORTHO05D000421 4.5e-06 55.1 111 30.6
BcaB07g33120 Brassica carinata HOM05D006890 ORTHO05D009907 7.7e-06 54.3 58 46.6
TWI14G0775 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 7.7e-06 54.3 111 29.7


User provided reference genes

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