Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 3.1e-30 134.8 86 100.0
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 3.1e-30 134.8 86 100.0
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 3.1e-30 134.8 86 100.0
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 3.1e-30 134.8 86 100.0
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 7.7e-29 130.2 86 89.5
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 7.7e-29 130.2 86 89.5
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.5e-27 125.9 86 73.3
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 4.7e-26 120.9 89 85.4
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.8e-25 119.0 89 71.9
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 5.2e-25 117.5 86 68.6
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 5.2e-25 117.5 86 69.8
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 4.4e-24 114.4 87 79.3
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 5.3e-22 107.5 89 65.2
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 5.3e-22 107.5 86 65.1
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.0e-21 105.5 87 63.2
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 4.5e-21 104.4 87 64.4
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 2.5e-19 98.6 87 69.0
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 7.2e-19 97.1 86 59.3
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 7.2e-19 97.1 86 59.3
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.2e-18 96.3 86 59.3
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 5.2e-17 90.9 52 82.7
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 6.8e-17 90.5 81 59.3
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 6.8e-17 90.5 52 82.7
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 6.8e-17 90.5 81 59.3
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 4.5e-13 77.8 77 51.9
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 7.7e-13 77.0 84 47.6
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.0e-12 76.6 83 59.0
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.0e-12 76.6 84 67.9
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.0e-12 76.6 84 47.6
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.3e-12 76.3 84 52.4
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.7e-12 75.9 83 47.0
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 5.0e-12 74.3 84 46.4
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 6.6e-12 73.9 82 45.1
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.1e-11 73.2 91 45.1
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-11 73.2 84 45.2
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.1e-11 73.2 82 45.1
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.5e-11 72.8 82 47.6
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.9e-11 72.4 86 55.8
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.9e-11 72.4 84 45.2
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.3e-11 71.6 85 45.9
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.2e-11 71.2 84 46.4
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.2e-11 71.2 82 46.3
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 4.2e-11 71.2 85 44.7
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.5e-11 70.9 86 45.3
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 5.5e-11 70.9 85 44.7
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 5.5e-11 70.9 84 45.2
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.2e-11 70.5 82 46.3
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 9.5e-11 70.1 84 45.2
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 9.5e-11 70.1 91 45.1
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 1.2e-10 69.7 84 44.0
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.6e-10 68.2 91 39.6
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 3.6e-10 68.2 86 52.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 3.6e-10 68.2 86 41.9
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.7e-10 67.8 82 43.9
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 4.7e-10 67.8 82 45.1
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.1e-10 67.4 82 45.1
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 8.0e-10 67.0 79 41.8
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.0e-09 66.6 85 42.4
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 1.8e-09 65.9 82 42.7
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.8e-09 65.9 82 43.9
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 2.3e-09 65.5 85 44.7
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 4.0e-09 64.7 86 51.2
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 5.2e-09 64.3 89 43.8
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 6.8e-09 63.9 81 42.0
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 6.8e-09 63.9 80 38.8
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 6.8e-09 63.9 89 48.3
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 6.8e-09 63.9 84 41.7
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 8.9e-09 63.5 84 40.5
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 8.9e-09 63.5 85 43.5
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 8.9e-09 63.5 84 41.7
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 1.2e-08 63.2 84 39.3
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.2e-08 63.2 88 50.0
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.2e-08 63.2 84 44.0
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 2.0e-08 62.4 85 44.7
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 2.0e-08 62.4 86 39.5
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.6e-08 62.0 81 42.0
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 3.4e-08 61.6 84 47.6
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 4.4e-08 61.2 84 41.7
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 5.7e-08 60.8 82 42.7
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 5.7e-08 60.8 75 44.0
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 5.7e-08 60.8 82 41.5
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 9.8e-08 60.1 84 40.5
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 9.8e-08 60.1 84 40.5
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 9.8e-08 60.1 80 42.5
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 9.8e-08 60.1 85 41.2
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 9.8e-08 60.1 82 41.5
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 1.3e-07 59.7 93 39.8
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.3e-07 59.7 84 39.3
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.3e-07 59.7 82 56.1
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 89 40.4
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-07 59.3 89 40.4
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.7e-07 59.3 89 43.8
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 1.7e-07 59.3 85 40.0
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 2.2e-07 58.9 49 53.1
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.2e-07 58.9 85 38.8
BcaB03g12941 Brassica carinata HOM05D006783 ORTHO05D008330 2.8e-07 58.5 61 52.5
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 2.8e-07 58.5 87 47.1
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.7e-07 58.2 82 40.2
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 4.9e-07 57.8 84 40.5
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.9e-07 57.8 85 37.6
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.3e-07 57.4 93 38.7
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 8.3e-07 57.0 82 48.8
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 1.1e-06 56.6 85 42.4
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-06 56.6 87 37.9
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.4e-06 56.2 82 39.0
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.8e-06 55.8 48 56.2
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 1.8e-06 55.8 82 45.1
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 2.4e-06 55.5 84 48.8
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.4e-06 55.5 93 37.6
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.4e-06 55.5 84 41.7
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 3.1e-06 55.1 86 48.8
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 3.1e-06 55.1 90 37.8
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.1e-06 55.1 87 41.4
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 4.1e-06 54.7 85 36.5
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 4.1e-06 54.7 84 36.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 4.1e-06 54.7 80 35.0
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 4.1e-06 54.7 84 39.3
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 4.1e-06 54.7 82 40.2
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 4.1e-06 54.7 77 40.3
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.4e-06 54.3 83 37.3
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 7.0e-06 53.9 85 36.5


User provided reference genes

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