Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30418H Brassica oleracea HOM05D001837 ORTHO05D024639 1.1e-118 429.9 208 100.0
C05p17160 Brassica napus HOM05D001837 ORTHO05D024639 2.2e-101 372.5 180 99.4
BolC5t30412H Brassica oleracea HOM05D001837 ORTHO05D003156 1.5e-62 243.4 280 53.2
Thhalv10007954m.g Eutrema salsugineum HOM05D001837 ORTHO05D003156 3.1e-60 235.7 280 50.4
C08p43030 Brassica napus HOM05D001837 ORTHO05D003156 7.0e-60 234.6 281 51.6
BolC8t51858H Brassica oleracea HOM05D001837 ORTHO05D003156 7.0e-60 234.6 281 51.6
A09p59690 Brassica napus HOM05D001837 ORTHO05D003156 1.0e-58 230.7 281 51.6
BraA09t41346Z Brassica rapa HOM05D001837 ORTHO05D003156 1.0e-58 230.7 281 51.6
BcaC07g41294 Brassica carinata HOM05D001837 ORTHO05D003156 2.5e-57 226.1 276 51.1
BraA06t24609Z Brassica rapa HOM05D001837 ORTHO05D003156 1.6e-56 223.4 276 51.1
CARHR019390 Cardamine hirsuta HOM05D001837 ORTHO05D003156 2.3e-55 219.5 277 48.4
BraA08t34956Z Brassica rapa HOM05D001837 ORTHO05D003156 5.2e-55 218.4 284 48.2
Carub.0001s1840 Capsella rubella HOM05D001837 ORTHO05D003156 5.8e-54 214.9 290 45.5
AL1G31230 Arabidopsis lyrata HOM05D001837 ORTHO05D003156 2.2e-53 213.0 280 46.4
BcaC05g25775 Brassica carinata HOM05D001837 ORTHO05D003156 3.7e-53 212.2 266 50.8
BolC8t49515H Brassica oleracea HOM05D001837 ORTHO05D003156 2.0e-51 206.5 291 45.4
C08p18910 Brassica napus HOM05D001837 ORTHO05D003156 2.7e-51 206.1 284 45.4
AT1G18750 Arabidopsis thaliana HOM05D001837 ORTHO05D003156 6.0e-51 204.9 317 42.3
A08p30230 Brassica napus HOM05D001837 ORTHO05D003156 6.0e-51 204.9 287 46.0
BcaC07g38943 Brassica carinata HOM05D001837 ORTHO05D003156 7.8e-51 204.5 249 49.0
Sp1g16760 Schrenkiella parvula HOM05D001837 ORTHO05D003156 1.5e-49 200.3 284 44.7
BcaB03g14479 Brassica carinata HOM05D001837 ORTHO05D003156 4.3e-49 198.7 281 47.0
A06p14920 Brassica napus HOM05D001837 ORTHO05D003156 6.8e-47 191.4 238 51.7
A06p14960 Brassica napus HOM05D001837 ORTHO05D003156 1.2e-46 190.7 238 51.7
BcaB07g31892 Brassica carinata HOM05D001837 ORTHO05D003156 1.5e-46 190.3 278 46.0
BraA06t24615Z Brassica rapa HOM05D001837 ORTHO05D003156 3.4e-46 189.1 182 58.2
C05p17060 Brassica napus HOM05D001837 ORTHO05D003156 5.8e-46 188.3 182 59.3
A06p14980 Brassica napus HOM05D001837 ORTHO05D003156 2.2e-45 186.4 211 52.1
BcaB03g12962 Brassica carinata HOM05D001837 ORTHO05D003156 1.4e-44 183.7 247 47.0
Aa31LG7G3540 Aethionema arabicum HOM05D001837 ORTHO05D003156 1.6e-35 153.7 275 37.8
BraA06t24612Z Brassica rapa HOM05D001837 ORTHO05D024639 4.6e-35 152.1 111 70.3
A06p14940 Brassica napus HOM05D001837 ORTHO05D003156 3.9e-34 149.1 140 58.6
A06p14890 Brassica napus HOM05D001837 ORTHO05D003156 2.6e-22 109.8 137 47.4
BolC5t30414H Brassica oleracea HOM05D001837 ORTHO05D024639 5.8e-22 108.6 57 89.5
THA.LOC104813882 Tarenaya hassleriana HOM05D001837 ORTHO05D003156 8.4e-21 104.8 251 33.1
Sp5g29630 Schrenkiella parvula HOM05D001837 ORTHO05D003156 4.8e-16 89.0 232 34.1
CSS0026210 Camellia sinensis var. sinensis HOM05D001837 ORTHO05D003156 7.1e-12 75.1 139 34.5
C05p17140 Brassica napus HOM05D001837 ORTHO05D003156 3.5e-11 72.8 111 43.2
Thecc.03G090700 Theobroma cacao HOM05D001837 ORTHO05D003156 1.3e-10 70.9 139 30.9
GSVIVG01007989001 Vitis vinifera HOM05D001837 ORTHO05D003156 1.8e-10 70.5 207 29.0
FAN12G3985 Fragaria x ananassa HOM05D001837 ORTHO05D003156 2.3e-10 70.1 114 34.2
Ciclev10020575m.g Citrus clementina HOM05D001837 ORTHO05D003156 5.1e-10 68.9 158 30.4
Sc12g0006430 Simmondsia chinensis HOM05D001837 ORTHO05D003156 5.1e-10 68.9 222 27.9
Manes.14G079700 Manihot esculenta HOM05D001837 ORTHO05D003156 2.5e-09 66.6 134 30.6
Dinv38727 Davidia involucrata HOM05D001837 ORTHO05D003156 4.3e-09 65.9 136 30.9
Rhsim12G0155800 Rhododendron simsii HOM05D001837 ORTHO05D003156 4.3e-09 65.9 133 30.8
Manes.06G091500 Manihot esculenta HOM05D001837 ORTHO05D003156 7.4e-09 65.1 139 28.8
Actinidia04882 Actinidia chinensis HOM05D001837 ORTHO05D003156 9.6e-09 64.7 139 30.2
Duzib205G1152 Durio zibethinus HOM05D001837 ORTHO05D003156 1.3e-08 64.3 140 30.0
Gorai.008G194100 Gossypium raimondii HOM05D001837 ORTHO05D003156 1.3e-08 64.3 135 29.6
Hma1.2p1_1619F.1_g293930 Hydrangea macrophylla HOM05D001837 ORTHO05D003156 1.3e-08 64.3 94 40.4
Hund02639 Selenicereus undatus HOM05D001837 ORTHO05D003156 1.3e-08 64.3 136 28.7
Gohir.D12G180800 Gossypium hirsutum HOM05D001837 ORTHO05D003156 1.6e-08 63.9 135 29.6
Ciclev10031963m.g Citrus clementina HOM05D001837 ORTHO05D003156 2.1e-08 63.5 139 28.8
FvH4_5g14780 Fragaria vesca HOM05D001837 ORTHO05D003156 3.7e-08 62.8 136 27.9
Gohir.D07G070300 Gossypium hirsutum HOM05D001837 ORTHO05D003156 3.7e-08 62.8 138 29.0
Gorai.001G074200 Gossypium raimondii HOM05D001837 ORTHO05D003156 3.7e-08 62.8 138 29.0
Manes.05G103601 Manihot esculenta HOM05D001837 ORTHO05D003156 4.8e-08 62.4 224 25.9
Aqoxy3G03432 Aquilegia oxysepala HOM05D001837 ORTHO05D003156 6.2e-08 62.0 140 30.0
TAR374G0034 Trochodendron aralioides HOM05D001837 ORTHO05D003156 6.2e-08 62.0 139 29.5
Duzib068G1234 Durio zibethinus HOM05D001837 ORTHO05D003156 8.1e-08 61.6 139 29.5
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.1e-08 61.6 116 29.3
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 8.1e-08 61.6 136 27.2
HanXRQChr05g0156101 Helianthus annuus HOM05D001837 ORTHO05D003156 8.1e-08 61.6 139 27.3
Lsat_1_v5_gn_9_27060 Lactuca sativa HOM05D001837 ORTHO05D003156 8.1e-08 61.6 139 30.2
Gohir.A12G178400 Gossypium hirsutum HOM05D001837 ORTHO05D003156 1.1e-07 61.2 135 28.9
Manes.01G034600 Manihot esculenta HOM05D001837 ORTHO05D003156 1.4e-07 60.8 224 27.2
FAN07G1123 Fragaria x ananassa HOM05D001837 ORTHO05D003156 2.4e-07 60.1 136 27.9
Gohir.A07G065800 Gossypium hirsutum HOM05D001837 ORTHO05D003156 2.4e-07 60.1 138 28.3
Nn3g17279 Nelumbo nucifera HOM05D001837 ORTHO05D003156 2.4e-07 60.1 241 26.6
FAN17G3096 Fragaria x ananassa HOM05D001837 ORTHO05D003156 3.1e-07 59.7 139 27.3
Nn4g23208 Nelumbo nucifera HOM05D001837 ORTHO05D003156 3.1e-07 59.7 260 25.8
Nn4g23210 Nelumbo nucifera HOM05D001837 ORTHO05D003156 3.1e-07 59.7 260 25.8
Eucgr.B00522 Eucalyptus grandis HOM05D001837 ORTHO05D003156 5.3e-07 58.9 134 27.6
MD06G1194900 Malus domestica HOM05D001837 ORTHO05D003156 5.3e-07 58.9 139 26.6
MD13G1070300 Malus domestica HOM05D001837 ORTHO05D003156 5.3e-07 58.9 139 27.3
MD14G1201900 Malus domestica HOM05D001837 ORTHO05D003156 5.3e-07 58.9 136 26.5
RcHm_v2.0_Chr7g0181601 Rosa chinensis HOM05D001837 ORTHO05D003156 5.3e-07 58.9 136 27.2
ECA246G5049 Erigeron canadensis HOM05D001837 ORTHO05D003156 6.9e-07 58.5 139 28.1
FvH4_4g31160 Fragaria vesca HOM05D001837 ORTHO05D003156 6.9e-07 58.5 139 27.3
Gohir.D13G076000 Gossypium hirsutum HOM05D001837 ORTHO05D003156 6.9e-07 58.5 139 28.1
Gorai.013G086600 Gossypium raimondii HOM05D001837 ORTHO05D003156 6.9e-07 58.5 139 28.1
MD16G1070700 Malus domestica HOM05D001837 ORTHO05D003156 6.9e-07 58.5 139 28.1
Lj4g0007316 Lotus japonicus HOM05D001837 ORTHO05D003156 9.0e-07 58.2 140 26.4
DCAR_016567 Daucus carota HOM05D001837 ORTHO05D003156 1.5e-06 57.4 216 24.1
Haze_07310 Corylus avellana HOM05D001837 ORTHO05D003156 2.0e-06 57.0 197 29.4
Phvul.003G189100 Phaseolus vulgaris HOM05D001837 ORTHO05D003156 2.0e-06 57.0 134 27.6
Prupe.1G276600 Prunus persica HOM05D001837 ORTHO05D003156 2.0e-06 57.0 139 26.6
Cpa.g.sc1.45 Carica papaya HOM05D001837 ORTHO05D003156 2.6e-06 56.6 139 26.6
Cfa018926 Carpinus fangiana HOM05D001837 ORTHO05D003156 3.4e-06 56.2 223 24.7
Atru.chr11.1764 Acer truncatum HOM05D001837 ORTHO05D003156 4.5e-06 55.8 136 25.0
Duzib268G0595 Durio zibethinus HOM05D001837 ORTHO05D003156 4.5e-06 55.8 139 27.3
Gohir.A13G076400 Gossypium hirsutum HOM05D001837 ORTHO05D003156 5.8e-06 55.5 139 27.3
PGR083G0186 Punica granatum HOM05D001837 ORTHO05D003156 5.8e-06 55.5 133 27.1
Carub.0002s2124 Capsella rubella HOM05D001837 ORTHO05D024639 7.6e-06 55.1 63 46.0
MBI05_g10771_MAGBIO Magnolia biondii HOM05D001837 ORTHO05D003156 7.6e-06 55.1 236 25.4
Thecc.02G343900 Theobroma cacao HOM05D001837 ORTHO05D003156 7.6e-06 55.1 139 25.9
CSS0046922 Camellia sinensis var. sinensis HOM05D001837 ORTHO05D003156 9.9e-06 54.7 181 27.6
PSO013G0078 Papaver somniferum HOM05D001837 ORTHO05D003156 9.9e-06 54.7 257 24.5


User provided reference genes

Program Settings