Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25723 Brassica carinata HOM05D007478 ORTHO05D001700 1.3e-83 313.2 174 100.0
BolC5t30355H Brassica oleracea HOM05D007478 ORTHO05D001700 1.3e-83 313.2 174 100.0
C05p16570 Brassica napus HOM05D007478 ORTHO05D001700 2.4e-82 308.9 174 98.9
A06p14310 Brassica napus HOM05D007478 ORTHO05D001700 5.6e-79 297.7 175 93.7
BraA06t24560Z Brassica rapa HOM05D007478 ORTHO05D001700 5.6e-79 297.7 175 93.1
BcaB07g31840 Brassica carinata HOM05D007478 ORTHO05D001700 7.6e-76 287.3 178 88.2
Sp1g16260 Schrenkiella parvula HOM05D007478 ORTHO05D001700 1.6e-70 269.6 179 80.4
Thhalv10009618m.g Eutrema salsugineum HOM05D007478 ORTHO05D001700 8.2e-70 267.3 180 77.8
C08p43450 Brassica napus HOM05D007478 ORTHO05D001700 2.4e-69 265.8 179 79.9
BolC8t51893H Brassica oleracea HOM05D007478 ORTHO05D001700 2.4e-69 265.8 179 79.9
A09p60000 Brassica napus HOM05D007478 ORTHO05D001700 3.1e-69 265.4 184 83.2
BraA09t41370Z Brassica rapa HOM05D007478 ORTHO05D001700 3.1e-69 265.4 184 83.2
AL1G30670 Arabidopsis lyrata HOM05D007478 ORTHO05D001700 5.0e-67 258.1 179 76.0
Carub.0001s1791 Capsella rubella HOM05D007478 ORTHO05D001700 5.0e-67 258.1 181 84.0
CARHR018850 Cardamine hirsuta HOM05D007478 ORTHO05D001700 6.5e-67 257.7 178 83.1
AT1G18290 Arabidopsis thaliana HOM05D007478 ORTHO05D001700 9.3e-66 253.8 178 75.3
A08p30470 Brassica napus HOM05D007478 ORTHO05D001700 1.8e-61 239.6 174 79.9
BraA08t34979Z Brassica rapa HOM05D007478 ORTHO05D001700 1.8e-61 239.6 174 79.9
BcaC07g38898 Brassica carinata HOM05D007478 ORTHO05D001700 3.1e-61 238.8 174 79.9
C08p18500 Brassica napus HOM05D007478 ORTHO05D001700 3.1e-61 238.8 174 79.9
BolC8t49482H Brassica oleracea HOM05D007478 ORTHO05D001700 3.1e-61 238.8 174 79.9
BcaB03g12972 Brassica carinata HOM05D007478 ORTHO05D001700 6.9e-61 237.7 174 74.7
BcaNung05439 Brassica carinata HOM05D007478 ORTHO05D001700 7.2e-50 201.1 174 66.7
THA.LOC104812173 Tarenaya hassleriana HOM05D007478 ORTHO05D001700 2.9e-43 179.1 185 64.9
BcaC07g41336 Brassica carinata HOM05D007478 ORTHO05D001700 1.4e-32 143.7 82 91.5
Thecc.03G058400 Theobroma cacao HOM05D007478 ORTHO05D001700 2.9e-27 125.9 177 39.5
COL.COLO4_05000 Corchorus olitorius HOM05D007478 ORTHO05D001700 8.6e-27 124.4 177 39.5
PGR083G2359 Punica granatum HOM05D007478 ORTHO05D001700 1.1e-26 124.0 182 38.5
Potri.012G045600 Populus trichocarpa HOM05D007478 ORTHO05D001700 1.9e-26 123.2 178 39.3
Eucgr.B00987 Eucalyptus grandis HOM05D007478 ORTHO05D001700 5.5e-26 121.7 175 36.6
Eucgr.B00885 Eucalyptus grandis HOM05D007478 ORTHO05D001700 1.2e-25 120.6 175 36.0
CiPaw.15G144400 Carya illinoinensis HOM05D007478 ORTHO05D001700 1.6e-25 120.2 179 39.1
Potri.015G036800 Populus trichocarpa HOM05D007478 ORTHO05D001700 1.6e-25 120.2 177 39.0
Sc15g0005840 Simmondsia chinensis HOM05D007478 ORTHO05D001700 2.1e-25 119.8 178 38.2
FAN08G3433 Fragaria x ananassa HOM05D007478 ORTHO05D001700 4.7e-25 118.6 185 40.5
Lj4g0014270 Lotus japonicus HOM05D007478 ORTHO05D001700 8.0e-25 117.9 177 39.5
Lalb_Chr09g0330341 Lupinus albus HOM05D007478 ORTHO05D001700 8.0e-25 117.9 173 38.7
QL10p030590 Quercus lobata HOM05D007478 ORTHO05D001700 1.0e-24 117.5 177 38.4
VMungo0251G2682 Vigna mungo HOM05D007478 ORTHO05D001700 1.4e-24 117.1 177 39.0
Cpa.g.sc3.382 Carica papaya HOM05D007478 ORTHO05D001700 1.8e-24 116.7 181 37.0
Glyma.05G246800 Glycine max HOM05D007478 ORTHO05D001700 4.0e-24 115.5 177 37.9
FAN13G0345 Fragaria x ananassa HOM05D007478 ORTHO05D001700 5.2e-24 115.2 185 39.5
FAN18G0488 Fragaria x ananassa HOM05D007478 ORTHO05D001700 6.8e-24 114.8 185 39.5
Lalb_Chr16g0386951 Lupinus albus HOM05D007478 ORTHO05D001700 8.9e-24 114.4 174 36.8
Prupe.5G234600 Prunus persica HOM05D007478 ORTHO05D001700 8.9e-24 114.4 185 38.9
Sabra12G0031700 Salix brachista HOM05D007478 ORTHO05D001700 8.9e-24 114.4 177 37.9
FvH4_5g17470 Fragaria vesca HOM05D007478 ORTHO05D001700 1.5e-23 113.6 185 38.9
Lalb_Chr05g0221601 Lupinus albus HOM05D007478 ORTHO05D001700 5.7e-23 111.7 173 35.3
Hma1.2p1_0163F.1_g073010 Hydrangea macrophylla HOM05D007478 ORTHO05D001700 7.5e-23 111.3 126 46.0
Phvul.002G330900 Phaseolus vulgaris HOM05D007478 ORTHO05D001700 7.5e-23 111.3 177 37.3
Duzib068G1147 Durio zibethinus HOM05D007478 ORTHO05D001700 9.8e-23 110.9 174 36.8
Aqoxy5G00397 Aquilegia oxysepala HOM05D007478 ORTHO05D001700 1.3e-22 110.5 177 35.6
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 1.7e-22 110.2 177 37.9
Cc04_g06130 Coffea canephora HOM05D007478 ORTHO05D001700 2.2e-22 109.8 177 35.6
Glyma.08G055200 Glycine max HOM05D007478 ORTHO05D001700 2.2e-22 109.8 178 36.5
Ca_17182_v3 Cicer arietinum L. HOM05D007478 ORTHO05D001700 2.8e-22 109.4 177 35.0
FAN04G1368 Fragaria x ananassa HOM05D007478 ORTHO05D001700 2.8e-22 109.4 131 47.3
ClCG06G014210 Citrullus lanatus HOM05D007478 ORTHO05D001700 3.7e-22 109.0 180 37.2
TWI81G0631 Tripterygium wilfordii HOM05D007478 ORTHO05D001700 3.7e-22 109.0 182 36.8
MELO3C017371.2 Cucumis melo HOM05D007478 ORTHO05D001700 8.3e-22 107.8 179 36.9
MD06G1228100 Malus domestica HOM05D007478 ORTHO05D001700 8.3e-22 107.8 185 39.5
Psat4g000040 Pisum sativum HOM05D007478 ORTHO05D001700 1.1e-21 107.5 177 36.2
Sabra15G0031300 Salix brachista HOM05D007478 ORTHO05D001700 1.1e-21 107.5 181 36.5
Gohir.D12G270300 Gossypium hirsutum HOM05D007478 ORTHO05D001700 1.8e-21 106.7 180 37.8
Gorai.008G290600 Gossypium raimondii HOM05D007478 ORTHO05D001700 1.8e-21 106.7 180 37.2
MD14G1237300 Malus domestica HOM05D007478 ORTHO05D001700 1.8e-21 106.7 185 37.8
Gohir.A12G269800 Gossypium hirsutum HOM05D007478 ORTHO05D001700 5.4e-21 105.1 180 36.7
EL10As7g23792 Beta vulgaris HOM05D007478 ORTHO05D001700 7.0e-21 104.8 177 33.9
RcHm_v2.0_Chr7g0178221 Rosa chinensis HOM05D007478 ORTHO05D001700 1.2e-20 104.0 180 37.2
Sed0016646 Sechium edule HOM05D007478 ORTHO05D001700 1.2e-20 104.0 175 35.4
GSVIVG01008464001 Vitis vinifera HOM05D007478 ORTHO05D001700 1.6e-20 103.6 129 44.2
TPR.G1399 Trifolium pratense HOM05D007478 ORTHO05D001700 2.7e-20 102.8 177 35.0
Medtr8g107420 Medicago truncatula HOM05D007478 ORTHO05D001700 3.5e-20 102.4 177 35.0
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 4.5e-20 102.1 178 37.6
CsaV3_1G004460 Cucumis sativus L. HOM05D007478 ORTHO05D001700 6.6e-19 98.2 118 44.1
MSTRG.9308 Avicennia marina HOM05D007478 ORTHO05D001700 1.9e-18 96.7 176 34.7
Sed0024095 Sechium edule HOM05D007478 ORTHO05D001700 5.6e-18 95.1 181 33.1
Oeu046159.1 Olea europaea HOM05D007478 ORTHO05D001700 1.2e-17 94.0 178 34.8
Oeu026265.1 Olea europaea HOM05D007478 ORTHO05D001700 1.6e-17 93.6 178 34.8
Duzib205G1935 Durio zibethinus HOM05D007478 ORTHO05D001700 3.0e-16 89.4 97 47.4
Haze_18881 Corylus avellana HOM05D007478 ORTHO05D001700 4.0e-16 89.0 136 39.0
MSTRG.4582 Avicennia marina HOM05D007478 ORTHO05D001700 5.2e-16 88.6 175 32.6
Rhsim12G0138100 Rhododendron simsii HOM05D007478 ORTHO05D001700 5.2e-16 88.6 195 34.4
Migut.D01319 Erythranthe guttata HOM05D007478 ORTHO05D001700 2.0e-15 86.7 175 34.3
Dinv08199 Davidia involucrata HOM05D007478 ORTHO05D001700 7.5e-15 84.7 168 33.9
MBI16_g21180_MAGBIO Magnolia biondii HOM05D007478 ORTHO05D001700 7.5e-15 84.7 140 37.9
SalBow1G4808 Salvia bowleyana HOM05D007478 ORTHO05D001700 3.7e-14 82.4 183 36.1
SGA_v2.0_scaffold172G39020 Striga asiatica HOM05D007478 ORTHO05D001700 4.9e-14 82.0 180 32.2
ATR0326G051 Amborella trichopoda HOM05D001935 ORTHO05D001700 1.4e-13 80.5 181 33.1
BcaC07g41335 Brassica carinata HOM05D007478 ORTHO05D001700 3.2e-13 79.3 61 65.6
HPP92_004882 Vanilla planifolia HOM05D007478 ORTHO05D001700 7.0e-13 78.2 190 32.6
Zm00001eb125870 Zea mays HOM05D007478 ORTHO05D001700 9.2e-13 77.8 106 41.5
Zm00001eb126350 Zea mays HOM05D007478 ORTHO05D001700 2.0e-12 76.6 110 41.8
AUR62042856 Chenopodium quinoa HOM05D007478 ORTHO05D001700 2.7e-12 76.3 173 33.5
Os01g0121000 Oryza sativa ssp. japonica HOM05D007478 ORTHO05D001700 2.7e-12 76.3 117 41.9
HPP92_004837 Vanilla planifolia HOM05D007478 ORTHO05D001700 2.7e-12 76.3 190 31.6
HPP92_004839 Vanilla planifolia HOM05D007478 ORTHO05D001700 3.5e-12 75.9 187 31.0
Manes.06G004900 Manihot esculenta HOM05D007478 ORTHO05D001700 5.0e-11 72.0 140 33.6
QL04p087054 Quercus lobata HOM05D001935 ORTHO05D001700 1.1e-10 70.9 82 43.9
CANSAT80G2839 Cannabis sativa HOM05D007478 ORTHO05D001700 1.5e-10 70.5 78 44.9
Zm00001eb334830 Zea mays HOM05D007478 ORTHO05D001700 2.5e-10 69.7 110 39.1
Nitab4.5_0000414g0010 Nicotiana tabacum HOM05D001935 ORTHO05D001700 4.4e-07 58.9 174 26.4
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.3e-06 57.4 193 28.5
Nitab4.5_0001648g0030 Nicotiana tabacum HOM05D001935 ORTHO05D001700 4.9e-06 55.5 174 26.4
SGA_v2.0_scaffold15G07193 Striga asiatica HOM05D001022 ORTHO05D000825 8.3e-06 54.7 107 36.4


User provided reference genes

Program Settings