Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 9.0e-50 199.9 98 100.0
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 1.7e-48 195.7 98 98.0
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 5.0e-48 194.1 98 96.9
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 7.1e-47 190.3 98 94.9
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 7.9e-46 186.8 99 94.9
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 1.0e-45 186.4 99 94.9
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 9.0e-42 173.3 98 84.7
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.5e-41 172.6 98 84.7
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.5e-41 172.6 98 84.7
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 2.0e-41 172.2 98 83.7
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 2.0e-41 172.2 98 83.7
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 3.4e-41 171.4 98 84.7
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.1e-39 166.4 95 85.3
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.9e-39 165.6 93 84.9
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.0e-37 159.8 93 82.8
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 3.9e-37 157.9 98 78.6
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 1.5e-36 156.0 90 82.2
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 2.2e-35 152.1 91 83.5
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 5.9e-25 117.5 98 63.3
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 2.9e-24 115.2 105 60.0
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 5.0e-24 114.4 105 60.0
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 6.5e-24 114.0 105 60.0
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 6.5e-24 114.0 104 61.5
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 6.5e-24 114.0 104 61.5
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-23 113.2 105 59.0
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-23 113.2 103 60.2
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 1.9e-23 112.5 103 60.2
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-23 112.5 103 60.2
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 1.9e-23 112.5 103 60.2
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 3.2e-23 111.7 106 62.3
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 7.2e-23 110.5 106 58.5
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 7.2e-23 110.5 107 57.0
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.6e-22 109.4 105 59.0
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-22 109.0 103 60.2
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.1e-22 109.0 103 60.2
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.1e-22 109.0 103 60.2
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.7e-22 108.6 104 57.7
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 4.7e-22 107.8 102 60.8
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 6.1e-22 107.5 98 60.2
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 1.4e-21 106.3 106 55.7
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 4.0e-21 104.8 102 57.8
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.8e-18 95.9 99 56.6
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 5.0e-16 87.8 113 47.8
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.5e-15 85.5 97 49.5
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 8.0e-14 80.5 101 49.5
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 3.4e-12 75.1 72 58.3
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 3.7e-11 71.6 89 49.4
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 3.1e-10 68.6 91 41.8
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 5.4e-10 67.8 99 43.4
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 5.4e-10 67.8 99 43.4
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 9.1e-10 67.0 96 40.6
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 1.6e-09 66.2 88 44.3
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.5e-09 65.1 98 40.8
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.5e-09 64.7 99 42.4
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.5e-09 64.7 89 42.7
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.5e-09 64.7 88 44.3
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 4.5e-09 64.7 100 42.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.9e-09 64.3 113 36.3
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 5.9e-09 64.3 87 40.2
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.3e-08 63.2 102 36.3
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 1.3e-08 63.2 118 34.7
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 1.7e-08 62.8 99 41.4
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.9e-08 62.0 108 37.0
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 2.9e-08 62.0 104 36.5
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 2.9e-08 62.0 104 37.5
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 5.0e-08 61.2 94 38.3
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 5.0e-08 61.2 98 41.8
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 5.0e-08 61.2 102 39.2
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 5.0e-08 61.2 102 39.2
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 5.0e-08 61.2 104 39.4
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 6.5e-08 60.8 99 39.4
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 8.5e-08 60.5 90 43.3
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.1e-07 60.1 107 38.3
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.1e-07 60.1 97 39.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.1e-07 60.1 84 40.5
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.1e-07 60.1 109 36.7
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.1e-07 60.1 106 36.8
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.1e-07 60.1 93 40.9
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.5e-07 59.7 88 39.8
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 2.5e-07 58.9 89 38.2
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.2e-07 58.5 100 37.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.2e-07 58.5 100 37.0
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 4.2e-07 58.2 82 41.5
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 5.5e-07 57.8 84 39.3
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.5e-07 57.8 99 39.4
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 7.2e-07 57.4 89 41.6
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.2e-07 57.4 104 36.5
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 7.2e-07 57.4 65 49.2
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 9.4e-07 57.0 107 37.4
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 9.4e-07 57.0 103 34.0
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.2e-06 56.6 47 61.7
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.2e-06 56.6 36 72.2
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.2e-06 56.6 83 43.4
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.2e-06 56.6 93 37.6
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 1.2e-06 56.6 105 39.0
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.6e-06 56.2 95 40.0
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 1.6e-06 56.2 93 37.6
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.6e-06 56.2 104 34.6
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.6e-06 56.2 92 39.1
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 2.1e-06 55.8 95 38.9
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 2.7e-06 55.5 90 34.4
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 2.7e-06 55.5 90 40.0
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.7e-06 55.5 83 43.4
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.7e-06 55.5 83 43.4
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.7e-06 55.5 90 40.0
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 3.6e-06 55.1 97 36.1
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 3.6e-06 55.1 92 38.0
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 4.7e-06 54.7 104 38.5
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 4.7e-06 54.7 83 41.0
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 4.7e-06 54.7 100 33.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 4.7e-06 54.7 90 41.1
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 8.0e-06 53.9 88 38.6
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 8.0e-06 53.9 118 33.9


User provided reference genes

Program Settings