Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 0.0e+00 1152.9 570 100.0
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 0.0e+00 1139.0 570 98.4
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 0.0e+00 1134.8 561 99.8
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 0.0e+00 1130.9 570 97.7
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 0.0e+00 1127.9 570 97.5
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 0.0e+00 1121.7 571 96.5
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 0.0e+00 1119.0 570 96.1
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 0.0e+00 1099.3 572 94.4
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 0.0e+00 1099.3 572 94.4
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 0.0e+00 1096.6 571 93.9
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 0.0e+00 1092.8 571 93.9
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 0.0e+00 1090.1 567 93.8
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 0.0e+00 1077.0 571 91.8
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 5.8e-311 1070.1 571 91.8
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 1.0e-310 1069.3 571 91.4
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.7e-310 1068.5 572 90.9
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 2.6e-306 1054.7 573 90.4
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 4.4e-306 1053.9 562 91.5
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 6.2e-292 1006.9 568 85.7
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 2.8e-284 981.5 558 86.7
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.3e-265 919.5 574 77.7
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 8.4e-265 916.8 574 77.0
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 2.7e-263 911.8 567 76.0
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 3.5e-263 911.4 577 76.1
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 2.3e-262 908.7 569 76.4
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 5.1e-262 907.5 569 75.7
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 8.7e-262 906.7 569 76.3
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.9e-261 905.6 600 73.3
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 5.6e-261 904.0 575 76.0
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 1.3e-260 902.9 572 75.5
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.6e-260 902.5 567 75.0
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 2.1e-260 902.1 565 75.0
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.8e-260 901.0 569 76.3
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 6.2e-260 900.6 576 75.9
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 5.8e-258 894.0 547 76.8
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 5.8e-258 894.0 566 75.1
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 7.6e-258 893.6 548 76.8
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 7.6e-258 893.6 568 74.6
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.0e-257 893.3 569 74.7
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.7e-257 892.5 572 74.1
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 6.5e-257 890.6 567 74.1
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.1e-256 889.8 577 74.5
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 2.5e-256 888.6 567 73.9
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 2.5e-256 888.6 548 77.2
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 4.2e-256 887.9 568 73.9
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 4.2e-256 887.9 567 74.6
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.2e-255 886.3 567 73.4
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 2.1e-255 885.6 566 74.4
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 4.6e-255 884.4 569 74.9
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 1.0e-254 883.2 573 73.5
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 1.3e-254 882.9 566 74.4
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 2.3e-254 882.1 567 72.5
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 3.0e-254 881.7 569 74.9
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 5.1e-254 880.9 566 73.7
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 1.3e-252 876.3 569 73.5
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 1.3e-252 876.3 571 73.2
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 6.2e-252 874.0 568 73.6
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 1.1e-251 873.2 571 72.9
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 1.8e-251 872.5 552 73.6
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 5.3e-251 870.9 572 73.3
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 7.6e-250 867.1 568 72.2
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.0e-249 866.7 567 72.5
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 1.0e-249 866.7 572 72.7
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 1.3e-249 866.3 567 72.3
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 1.7e-249 865.9 567 72.7
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 5.0e-249 864.4 570 73.0
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 8.4e-249 863.6 568 72.9
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 1.1e-248 863.2 567 72.3
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 1.4e-248 862.8 568 73.1
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 1.9e-248 862.4 568 72.7
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 3.2e-248 861.7 567 71.6
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 4.2e-248 861.3 570 72.1
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 9.3e-248 860.1 571 71.6
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 1.0e-246 856.7 567 72.0
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 1.8e-246 855.9 514 77.4
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 5.1e-246 854.4 569 70.3
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 3.3e-245 851.7 531 74.8
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 9.7e-245 850.1 620 68.9
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 9.0e-243 843.6 531 75.1
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 2.6e-242 842.0 578 70.8
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 2.6e-242 842.0 578 70.9
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.5e-242 841.3 575 71.7
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 2.2e-241 839.0 559 70.7
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.6e-239 832.8 571 70.1
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.6e-239 832.8 556 71.2
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 8.8e-238 827.0 574 69.0
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 5.7e-237 824.3 529 73.9
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 7.4e-237 823.9 514 74.1
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 2.8e-236 822.0 568 68.3
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 3.7e-236 821.6 552 70.1
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 5.0e-233 811.2 596 64.8
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 7.2e-232 807.4 589 67.7
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 6.7e-230 800.8 570 67.5
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.1e-229 800.0 564 68.4
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 1.5e-229 799.7 528 70.1
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 2.6e-229 798.9 569 67.5
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 5.0e-225 784.6 569 66.6
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 3.7e-220 768.5 659 60.5
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 3.1e-219 765.4 497 72.8
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 1.2e-218 763.5 620 60.8
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 5.5e-208 728.0 448 77.2
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.1e-200 703.7 569 62.0
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.1e-195 687.2 408 79.9
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 3.0e-193 679.1 437 73.2
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 3.1e-190 669.1 439 72.0
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 4.0e-190 668.7 434 73.7
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 2.2e-188 662.9 428 74.5
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 4.6e-178 628.6 542 57.2
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 1.9e-176 623.2 425 71.5
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 8.9e-174 614.4 434 71.2
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 1.1e-158 564.3 434 67.1
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 5.6e-152 542.0 563 50.1
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 5.6e-152 542.0 515 54.0
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 5.8e-149 531.9 535 50.1
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 1.7e-148 530.4 369 72.1
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 2.1e-122 443.7 377 60.2
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 3.3e-120 436.4 579 41.3
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-91 340.5 222 68.5
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 2.3e-89 334.0 276 63.4
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 1.3e-87 328.2 207 77.3
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 3.8e-84 316.6 581 38.2
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 4.1e-78 296.6 218 69.3
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 1.6e-77 294.7 223 60.1
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 7.8e-69 265.8 550 34.0
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 5.6e-67 259.6 588 32.3
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 4.4e-56 223.4 508 33.1
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.9e-55 220.7 148 75.7
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 6.4e-55 219.5 148 75.0
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.3e-51 206.1 136 76.5
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.7e-47 194.9 126 69.8
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 1.6e-42 178.3 95 75.8
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 9.0e-41 172.6 106 76.4
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 2.0e-40 171.4 191 53.9
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.4e-25 121.3 85 69.4
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 3.3e-19 100.9 74 60.8
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.0e-16 91.7 50 76.0
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.6e-16 91.3 63 61.9
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 4.3e-11 73.9 59 62.7
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 3.7e-10 70.9 327 26.9
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 8.2e-10 69.7 327 26.6
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 3.1e-09 67.8 43 65.1
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 1.5e-08 65.5 306 26.8
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 2.6e-08 64.7 358 24.0
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 4.5e-08 63.9 337 27.6
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 6.5e-07 60.1 301 27.6
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 6.5e-07 60.1 327 25.4
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 1.9e-06 58.5 328 22.6
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 1.9e-06 58.5 328 22.6
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 3.2e-06 57.8 311 26.0
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 3.2e-06 57.8 319 25.4
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 4.2e-06 57.4 291 25.1
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 5.5e-06 57.0 327 22.0
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 5.5e-06 57.0 327 22.0
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 5.5e-06 57.0 326 24.2
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 5.5e-06 57.0 328 22.0
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 5.5e-06 57.0 314 24.2
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 7.2e-06 56.6 316 24.7
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 7.2e-06 56.6 318 23.6


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