Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 1.0e-293 1012.7 517 100.0
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 1.2e-289 999.2 524 98.1
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 6.4e-288 993.4 517 98.5
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 4.9e-272 940.6 514 93.2
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 6.7e-269 930.2 534 90.4
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 8.5e-256 886.7 521 87.1
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 6.1e-254 880.6 521 85.8
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 3.9e-253 877.9 522 86.4
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 2.5e-252 875.2 521 85.8
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 9.4e-239 830.1 527 81.0
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 2.2e-219 765.8 537 74.1
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 1.0e-176 624.0 558 59.0
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 3.0e-176 622.5 560 58.9
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 8.6e-176 620.9 543 60.4
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 1.5e-175 620.2 555 59.5
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 1.2e-174 617.1 563 58.6
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 2.0e-172 609.8 541 59.1
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 7.6e-172 607.8 526 60.6
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 4.2e-170 602.1 556 57.0
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 7.1e-170 601.3 561 56.7
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 1.6e-169 600.1 556 57.0
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 3.5e-169 599.0 553 56.6
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 4.6e-169 598.6 533 58.9
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 2.3e-168 596.3 560 56.4
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 1.3e-166 590.5 562 56.9
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.6e-166 590.1 594 54.0
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 2.1e-166 589.7 588 53.9
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 1.4e-165 587.0 558 55.9
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 2.4e-165 586.3 551 54.8
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 9.0e-165 584.3 572 55.2
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 9.9e-164 580.9 571 55.5
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 6.4e-163 578.2 557 54.0
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 8.4e-163 577.8 553 55.2
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 4.2e-162 575.5 532 57.7
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 9.3e-162 574.3 549 55.0
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 2.7e-161 572.8 517 57.3
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 3.5e-161 572.4 566 54.8
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 3.5e-161 572.4 537 55.7
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 4.6e-161 572.0 539 55.7
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 3.0e-160 569.3 556 54.7
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 3.9e-160 568.9 560 55.0
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 1.1e-159 567.4 543 55.6
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 1.5e-159 567.0 541 56.0
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 1.5e-159 567.0 564 53.7
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.9e-159 566.6 553 54.6
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 2.5e-159 566.2 539 56.6
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 3.3e-159 565.8 571 53.9
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 5.6e-159 565.1 546 55.1
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 9.6e-159 564.3 531 56.3
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 2.8e-158 562.8 540 55.6
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 8.1e-158 561.2 603 51.4
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 6.9e-157 558.1 544 54.4
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 3.4e-156 555.8 577 52.9
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 2.9e-155 552.7 616 50.2
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 2.1e-153 546.6 325 87.1
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 5.1e-152 542.0 592 50.5
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 1.9e-151 540.0 627 49.0
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 1.3e-150 537.3 592 50.7
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 8.2e-150 534.6 552 53.4
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 8.4e-147 524.6 498 56.6
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 7.1e-146 521.5 538 53.2
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 4.6e-145 518.8 576 50.2
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 6.7e-144 515.0 575 50.1
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 1.1e-141 507.7 502 55.2
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 5.5e-138 495.4 504 54.0
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 8.8e-136 488.0 520 52.3
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 1.5e-135 487.3 522 51.1
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 3.3e-135 486.1 516 53.7
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 3.7e-134 482.6 490 53.1
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 8.2e-134 481.5 558 46.8
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 9.1e-133 478.0 556 49.3
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 1.3e-131 474.2 514 50.8
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 3.2e-130 469.5 430 57.9
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 3.6e-121 439.5 372 62.1
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 3.6e-121 439.5 555 46.7
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 3.0e-120 436.4 492 50.0
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 8.8e-112 408.3 561 42.2
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 1.3e-110 404.4 493 47.5
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.8e-109 400.6 435 50.6
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 5.0e-107 392.5 350 58.0
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 3.0e-104 383.3 589 39.0
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 2.0e-100 370.5 504 41.9
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 1.7e-94 350.9 275 64.0
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 9.5e-90 335.1 281 61.9
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 3.4e-87 326.6 388 49.2
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 1.7e-86 324.3 413 46.2
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 1.2e-84 318.2 365 50.1
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 1.2e-81 308.1 285 56.8
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 1.5e-71 274.6 171 83.0
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 6.4e-70 269.2 417 42.9
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 4.1e-69 266.5 284 51.4
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 7.3e-66 255.8 197 61.9
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 4.4e-55 219.9 246 50.0
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 5.6e-50 203.0 241 47.3
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 7.1e-45 186.0 211 48.8
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 1.2e-39 168.7 189 52.9
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 4.5e-39 166.8 124 61.3
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 1.6e-36 158.3 126 60.3
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 2.1e-36 157.9 189 46.6
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 2.1e-36 157.9 189 46.6
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.8e-35 154.8 115 59.1
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 5.6e-34 149.8 195 45.6
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 2.2e-30 137.9 165 46.7
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 2.0e-23 114.8 90 60.0
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 2.9e-22 110.9 159 44.7
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 2.0e-10 71.6 91 44.0


User provided reference genes

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