Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.4e-173 612.8 309 100.0
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.3e-171 606.3 309 98.7
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 2.5e-170 602.1 309 97.4
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.5e-170 602.1 309 98.7
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.0e-168 596.7 309 97.1
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 8.8e-168 593.6 309 96.4
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 8.0e-161 570.5 313 92.7
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 3.7e-158 561.6 313 90.7
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 2.3e-155 552.4 314 88.2
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 5.0e-155 551.2 313 88.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 7.3e-154 547.4 314 87.6
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 4.4e-151 538.1 314 87.3
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 7.0e-149 530.8 309 86.4
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 7.0e-149 530.8 310 84.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.6e-146 521.2 312 85.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 5.6e-146 521.2 312 85.3
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 8.0e-145 517.3 311 85.2
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.3e-142 510.0 313 82.7
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 5.4e-133 478.0 305 78.0
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 3.5e-132 475.3 269 83.6
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 4.6e-132 474.9 318 77.0
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.6e-132 474.9 270 84.1
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 6.0e-132 474.6 269 83.3
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.0e-131 473.8 270 83.7
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.3e-131 473.4 265 83.8
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 3.9e-131 471.9 305 75.4
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 5.1e-131 471.5 315 76.8
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 6.6e-131 471.1 312 75.3
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.5e-130 469.9 287 80.1
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.6e-130 468.0 270 83.0
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.6e-130 468.0 270 82.6
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 7.3e-130 467.6 282 80.1
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.6e-129 466.5 277 81.6
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 2.1e-129 466.1 290 79.0
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.8e-129 465.7 269 81.4
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 4.7e-129 464.9 307 75.6
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 8.1e-129 464.2 296 76.7
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 8.1e-129 464.2 299 76.3
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.0e-127 459.5 277 81.6
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 2.6e-127 459.1 262 83.2
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.6e-127 459.1 270 80.4
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 9.9e-127 457.2 309 72.8
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.3e-126 456.8 255 82.7
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 2.2e-126 456.1 269 79.9
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.9e-126 455.7 266 80.1
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 2.9e-126 455.7 313 72.2
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 4.9e-126 454.9 274 79.6
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 6.4e-126 454.5 298 75.8
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 6.4e-126 454.5 315 72.4
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 6.4e-126 454.5 261 82.8
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 8.4e-126 454.1 308 74.0
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.1e-125 453.8 254 83.9
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.1e-125 453.8 254 83.1
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 2.4e-125 452.6 295 75.6
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.4e-125 452.6 294 75.9
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 5.4e-125 451.4 267 79.8
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.4e-125 451.4 295 75.3
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 9.3e-125 450.7 308 74.0
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.6e-124 449.9 270 80.0
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.1e-124 449.5 300 74.0
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 2.7e-124 449.1 263 81.7
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.7e-124 449.1 255 81.6
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 2.7e-124 449.1 281 76.9
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 6.0e-124 448.0 261 79.3
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.0e-124 448.0 270 80.7
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 7.8e-124 447.6 262 81.7
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 7.8e-124 447.6 319 71.8
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 1.0e-123 447.2 304 73.0
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.0e-123 447.2 286 76.6
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.3e-123 446.8 281 75.4
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 3.0e-123 445.7 286 75.9
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 3.0e-123 445.7 289 74.7
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.9e-123 445.3 309 71.5
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 8.7e-123 444.1 306 72.9
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.5e-122 443.4 282 75.2
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.9e-122 443.0 300 74.0
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.5e-122 442.6 262 79.0
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 7.3e-122 441.0 275 76.0
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.3e-121 440.3 251 81.3
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 6.2e-121 438.0 305 71.8
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 6.2e-121 438.0 306 71.6
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 8.1e-121 437.6 305 71.8
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.1e-120 437.2 301 72.1
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 4.0e-120 435.3 275 75.6
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 5.3e-120 434.9 280 73.6
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 6.9e-120 434.5 292 72.3
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 9.0e-120 434.1 291 73.5
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 1.5e-119 433.3 243 81.5
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 1.5e-119 433.3 243 81.5
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 5.8e-119 431.4 302 70.9
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.7e-118 429.9 305 68.2
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 3.8e-118 428.7 243 80.7
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 4.2e-117 425.2 243 81.5
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 5.6e-114 414.8 252 78.6
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.6e-111 406.0 309 66.7
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 7.4e-106 387.9 269 69.1
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 2.1e-105 386.3 293 66.6
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 5.3e-104 381.7 219 82.2
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 2.7e-100 369.4 259 67.6
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 2.3e-99 366.3 279 64.5
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 3.9e-99 365.5 299 59.5
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 3.9e-99 365.5 264 72.3
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 5.7e-98 361.7 300 61.3
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.9e-94 349.4 270 68.1
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 4.2e-93 345.5 272 61.4
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 2.1e-92 343.2 199 82.9
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 2.3e-91 339.7 192 84.4
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.9e-90 336.7 192 80.7
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 9.7e-90 334.3 192 80.2
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 8.2e-89 331.3 190 82.6
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.4e-88 329.7 263 61.2
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 5.9e-87 325.1 190 80.5
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.0e-86 324.3 224 71.9
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.6e-84 315.5 173 83.8
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.8e-83 313.5 268 59.7
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 4.3e-82 308.9 243 58.8
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 2.8e-81 306.2 187 79.1
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 2.2e-73 280.0 210 68.1
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.4e-67 260.8 256 53.1
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 8.0e-60 235.0 188 63.3
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.8e-59 233.8 256 52.3
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 3.0e-59 233.0 173 68.2
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 5.6e-37 159.1 132 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 5.2e-35 152.5 274 36.9
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 3.7e-33 146.4 82 79.3
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.1e-24 118.2 325 30.2
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 6.2e-20 102.4 300 30.7
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 8.1e-20 102.1 71 66.2
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.4e-19 101.3 65 72.3
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 8.4e-17 92.0 82 78.0
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 2.3e-14 84.0 104 51.9
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.5e-13 80.5 74 59.5


User provided reference genes

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