Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.7e-131 472.6 235 100.0
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 2.0e-127 459.1 235 98.3
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 5.8e-127 457.6 235 97.9
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 2.7e-116 422.2 235 89.4
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 9.5e-114 413.7 235 88.5
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 3.5e-108 395.2 235 84.3
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 7.8e-108 394.0 235 83.4
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 5.6e-106 387.9 237 81.4
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 2.1e-105 386.0 235 81.7
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.1e-105 386.0 235 82.1
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.1e-105 386.0 228 82.0
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.1e-105 386.0 235 82.1
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 8.1e-105 384.0 235 81.3
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 4.0e-104 381.7 235 80.4
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 8.9e-104 380.6 226 81.4
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 4.4e-103 378.3 226 81.0
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.7e-102 376.3 235 79.6
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 3.5e-100 368.6 256 72.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 4.6e-100 368.2 236 79.7
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 5.1e-99 364.8 233 78.1
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.5e-98 362.5 235 77.9
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 4.4e-95 351.7 235 74.9
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-87 326.2 245 70.6
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 6.7e-83 311.2 217 71.0
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 8.7e-83 310.8 227 65.6
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 8.7e-83 310.8 232 64.7
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.4e-69 266.9 221 58.4
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 4.2e-69 265.4 236 54.7
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 2.7e-68 262.7 222 56.8
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.3e-67 259.6 230 56.1
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 3.0e-67 259.2 225 55.6
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 6.7e-67 258.1 230 56.1
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.1e-66 257.3 202 58.4
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.9e-66 256.5 227 54.2
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 7.4e-66 254.6 222 57.7
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 7.4e-66 254.6 226 56.6
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 9.7e-66 254.2 223 57.4
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.3e-65 253.8 224 54.0
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.6e-65 253.4 210 56.7
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 4.8e-65 251.9 211 55.5
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.3e-65 251.5 243 51.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 8.2e-65 251.1 223 54.7
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 8.2e-65 251.1 223 57.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.1e-64 250.8 213 58.2
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 2.4e-64 249.6 233 51.9
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.4e-64 249.6 215 55.3
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.2e-63 247.3 233 52.8
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.2e-63 247.3 229 53.3
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.2e-63 247.3 222 55.9
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.5e-63 246.9 218 56.0
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 4.5e-63 245.4 202 59.9
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 5.9e-63 245.0 232 51.3
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 5.9e-63 245.0 214 55.1
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.0e-62 244.2 228 54.4
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 1.7e-62 243.4 205 55.6
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.9e-62 242.7 232 50.9
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 3.8e-62 242.3 209 55.5
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 5.0e-62 241.9 227 51.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 5.0e-62 241.9 238 50.8
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 5.0e-62 241.9 223 52.0
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 6.5e-62 241.5 211 53.1
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.1e-61 240.7 194 54.1
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.4e-61 240.4 231 54.5
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.4e-61 240.4 211 53.1
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 2.5e-61 239.6 201 55.7
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 4.2e-61 238.8 222 52.7
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 5.5e-61 238.4 216 54.6
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 5.5e-61 238.4 197 55.8
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 5.5e-61 238.4 201 53.7
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.2e-61 238.0 204 57.8
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 9.4e-61 237.7 207 52.7
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 9.4e-61 237.7 205 54.6
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 9.4e-61 237.7 222 52.7
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.6e-60 236.9 223 50.2
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 2.7e-60 236.1 201 54.7
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 4.6e-60 235.3 195 56.4
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.4e-59 233.8 220 50.9
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 3.9e-59 232.3 191 56.0
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 8.8e-59 231.1 197 55.3
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.5e-58 230.3 232 50.9
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 2.0e-58 229.9 228 51.8
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 4.3e-58 228.8 221 49.3
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 4.3e-58 228.8 222 50.0
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 5.7e-58 228.4 211 52.6
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 5.7e-58 228.4 202 53.5
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.3e-57 227.3 226 46.9
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.3e-57 227.3 216 50.5
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.7e-57 226.9 226 46.9
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.8e-57 226.1 219 52.5
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 4.8e-57 225.3 226 46.5
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 4.8e-57 225.3 175 57.1
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.4e-56 223.8 232 49.1
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 3.1e-56 222.6 201 52.7
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.1e-56 222.6 232 48.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.6e-55 219.5 226 45.6
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.4e-55 219.2 211 50.7
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 5.5e-53 211.8 220 47.7
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.4e-53 211.1 219 50.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.4e-53 211.1 191 52.9
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.6e-52 210.3 167 61.1
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.6e-52 210.3 211 48.8
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.6e-52 209.1 235 45.1
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.0e-51 207.6 251 46.6
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 2.3e-51 206.5 191 47.6
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 5.1e-51 205.3 188 50.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.7e-51 204.9 220 46.4
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 8.8e-51 204.5 164 53.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 8.8e-51 204.5 182 53.3
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-50 203.8 214 52.3
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.3e-49 200.7 193 52.3
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.1e-48 197.6 193 52.3
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.0e-47 193.4 184 48.9
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 3.5e-47 192.6 161 54.7
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.0e-46 191.0 202 49.0
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 2.2e-46 189.9 169 48.5
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.0e-46 188.7 222 48.6
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.2e-45 186.0 193 47.7
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 3.6e-44 182.6 194 51.5
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 4.0e-43 179.1 127 59.8
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.2e-39 167.5 251 38.6
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 5.9e-39 165.2 204 41.2
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.0e-38 164.5 269 42.0
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.0e-38 162.2 235 40.0
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.1e-37 161.0 226 41.2
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.1e-37 161.0 114 62.3
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 4.2e-37 159.1 201 40.3
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.1e-36 156.8 106 64.2
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 3.6e-36 156.0 194 41.2
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.2e-33 146.7 158 53.8
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 3.8e-30 136.0 124 47.6
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-25 120.6 53 94.3
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 6.3e-25 118.6 140 45.0
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 4.1e-24 115.9 67 76.1
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 4.5e-23 112.5 92 51.1
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.2e-20 104.4 129 46.5
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.4e-18 96.3 58 60.3
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 7.0e-16 88.6 59 61.0
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.6e-15 87.4 95 49.5
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.7e-15 86.7 61 52.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.3e-14 84.3 56 60.7
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.7e-14 84.0 92 43.5
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 9.5e-13 78.2 147 30.6
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.1e-11 73.2 73 49.3
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.5e-10 70.9 99 48.5
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 2.6e-10 70.1 102 43.1
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 9.8e-10 68.2 154 27.3
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.3e-09 67.8 72 47.2
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.2e-09 67.0 102 40.2
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.9e-09 66.6 49 59.2
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 3.0e-06 56.6 35 54.3
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.6e-06 55.5 74 47.3


User provided reference genes

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