Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 4.4e-94 347.8 162 100.0
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-78 295.8 137 99.3
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 8.5e-37 157.5 71 97.2
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.1e-36 157.1 69 100.0
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.9e-36 156.4 70 97.1
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 2.5e-36 156.0 69 98.6
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 2.5e-36 156.0 69 98.6
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 7.2e-36 154.5 69 97.1
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.6e-35 153.3 70 95.7
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 7.9e-35 151.0 69 94.2
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.4e-34 150.2 70 92.9
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 1.8e-34 149.8 70 92.9
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 1.8e-34 149.8 70 92.9
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.8e-34 149.8 70 92.9
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 2.3e-34 149.4 69 94.2
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 2.3e-34 149.4 69 94.2
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 2.3e-34 149.4 69 94.2
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 3.0e-34 149.1 69 94.2
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 3.9e-34 148.7 71 91.5
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 8.8e-34 147.5 69 89.9
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 8.8e-34 147.5 99 70.7
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 1.5e-33 146.7 70 91.4
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.6e-33 146.0 71 87.3
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 4.4e-33 145.2 70 90.0
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 4.4e-33 145.2 70 90.0
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 5.7e-33 144.8 70 90.0
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 5.7e-33 144.8 70 90.0
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 7.4e-33 144.4 70 88.6
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 7.4e-33 144.4 70 90.0
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 9.7e-33 144.1 72 84.7
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 9.7e-33 144.1 70 88.6
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 9.7e-33 144.1 76 81.6
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 9.7e-33 144.1 69 87.0
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 1.3e-32 143.7 70 88.6
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-32 143.3 72 86.1
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 1.7e-32 143.3 71 85.9
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 2.2e-32 142.9 71 85.9
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 2.2e-32 142.9 69 88.4
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.8e-32 142.5 70 88.6
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 2.8e-32 142.5 69 88.4
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.8e-32 142.5 70 87.1
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 3.7e-32 142.1 70 88.6
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 3.7e-32 142.1 69 88.4
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.8e-32 141.7 70 85.7
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 6.3e-32 141.4 89 69.7
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 6.3e-32 141.4 68 89.7
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 6.3e-32 141.4 69 89.9
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 8.2e-32 141.0 70 85.7
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 8.2e-32 141.0 82 76.8
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.1e-31 140.6 69 87.0
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.1e-31 140.6 69 87.0
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.1e-31 140.6 69 87.0
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 1.1e-31 140.6 70 87.1
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 1.1e-31 140.6 69 87.0
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.1e-31 140.6 78 73.1
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.1e-31 140.6 70 84.3
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.4e-31 140.2 70 87.1
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.4e-31 140.2 70 87.1
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.4e-31 140.2 69 87.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 1.8e-31 139.8 96 69.8
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 1.8e-31 139.8 96 69.8
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 1.8e-31 139.8 73 80.8
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 1.8e-31 139.8 69 85.5
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 1.8e-31 139.8 69 87.0
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 2.4e-31 139.4 60 98.3
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 2.4e-31 139.4 70 87.1
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 3.1e-31 139.0 101 67.3
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 3.1e-31 139.0 70 85.7
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 3.1e-31 139.0 70 85.7
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 3.1e-31 139.0 70 84.3
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.1e-31 138.7 71 83.1
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 5.3e-31 138.3 70 84.3
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.3e-31 138.3 70 84.3
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 7.0e-31 137.9 71 84.5
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 9.1e-31 137.5 70 82.9
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 9.1e-31 137.5 70 85.7
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 9.1e-31 137.5 70 82.9
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 1.2e-30 137.1 97 68.0
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.2e-30 137.1 69 85.5
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.6e-30 136.7 62 91.9
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 2.0e-30 136.3 71 80.3
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 2.6e-30 136.0 70 85.7
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.6e-30 136.0 70 81.4
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 2.6e-30 136.0 70 82.9
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.6e-30 136.0 70 81.4
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.5e-30 135.6 70 81.4
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 4.5e-30 135.2 70 82.9
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 4.5e-30 135.2 72 79.2
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 7.7e-30 134.4 70 78.6
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 7.7e-30 134.4 69 85.5
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-29 134.0 70 81.4
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 1.0e-29 134.0 69 81.2
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-29 133.7 70 81.4
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 1.3e-29 133.7 70 82.9
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.7e-29 133.3 70 80.0
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 2.2e-29 132.9 70 82.9
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.9e-29 132.5 68 85.3
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.9e-29 132.5 71 81.7
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 2.9e-29 132.5 70 77.1
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 3.8e-29 132.1 65 86.2
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 3.8e-29 132.1 70 82.9
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 3.8e-29 132.1 70 80.0
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.8e-29 132.1 70 80.0
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 5.0e-29 131.7 60 91.7
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 8.5e-29 131.0 70 82.9
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 8.5e-29 131.0 93 67.7
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.5e-29 131.0 70 80.0
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.1e-28 130.6 70 81.4
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-28 130.6 70 78.6
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-28 130.6 70 78.6
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 1.9e-28 129.8 71 74.6
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.9e-28 129.8 70 81.4
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 2.5e-28 129.4 70 80.0
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 2.5e-28 129.4 70 80.0
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 3.2e-28 129.0 70 77.1
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.2e-28 128.6 70 80.0
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.2e-28 128.6 70 80.0
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 4.2e-28 128.6 70 77.1
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 5.5e-28 128.3 70 80.0
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.5e-28 128.3 75 74.7
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 9.4e-28 127.5 68 77.9
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 9.4e-28 127.5 70 77.1
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 9.4e-28 127.5 69 73.9
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 9.4e-28 127.5 70 78.6
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.6e-27 126.7 70 80.0
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.6e-27 126.7 70 75.7
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 1.6e-27 126.7 60 86.7
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 2.1e-27 126.3 68 77.9
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.1e-27 126.3 70 75.7
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 2.7e-27 125.9 71 74.6
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 3.6e-27 125.6 70 75.7
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.6e-27 125.6 60 86.7
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 4.7e-27 125.2 69 76.8
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 8.0e-27 124.4 59 84.7
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 8.0e-27 124.4 68 72.1
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.0e-26 124.0 69 75.4
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 1.0e-26 124.0 70 75.7
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 1.0e-26 124.0 70 75.7
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 1.4e-26 123.6 68 77.9
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.3e-26 122.9 70 75.7
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 4.0e-26 122.1 70 72.9
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 6.7e-26 121.3 59 84.7
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 1.5e-25 120.2 70 72.9
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.6e-25 119.4 69 72.5
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.6e-25 119.4 70 70.0
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.6e-25 119.4 59 83.1
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 4.4e-25 118.6 70 70.0
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.7e-25 118.2 61 78.7
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 7.5e-25 117.9 61 78.7
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 1.7e-24 116.7 67 73.1
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 2.2e-24 116.3 67 71.6
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 2.2e-24 116.3 67 71.6
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 6.3e-24 114.8 59 81.4
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.1e-23 114.0 65 75.4
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.1e-23 114.0 65 75.4
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 2.4e-23 112.8 67 73.1
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 2.4e-23 112.8 70 70.0
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.1e-23 112.5 60 75.0
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 9.1e-23 110.9 57 77.2
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 2.0e-22 109.8 60 75.0
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 2.7e-22 109.4 59 74.6
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 2.7e-22 109.4 99 54.5
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.2e-21 106.3 70 68.6
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.9e-21 105.9 70 67.1
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 3.8e-21 105.5 66 68.2
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 8.5e-21 104.4 70 65.7
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 3.2e-20 102.4 72 59.7
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 1.6e-19 100.1 58 69.0
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.7e-19 99.4 57 66.7
BraA06t24291Z Brassica rapa HOM05D003896 ORTHO05D108218 3.6e-19 99.0 56 89.3
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 6.1e-19 98.2 58 67.2
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.8e-18 96.7 49 73.5
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 4.0e-18 95.5 78 56.4
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.2e-18 95.1 99 49.5
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.2e-17 94.0 104 48.1
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.5e-17 93.6 41 95.1
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 3.4e-17 92.4 42 90.5
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.1e-15 85.9 61 62.3
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.1e-12 77.4 70 54.3
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-12 77.0 43 76.7
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 2.1e-11 73.2 70 51.4
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 4.0e-10 68.9 36 80.6
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 5.2e-10 68.6 70 50.0
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 5.2e-10 68.6 34 67.6
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 1.7e-08 63.5 29 96.6
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 4.1e-07 58.9 50 52.0
C02p49050 Brassica napus HOM05D003896 ORTHO05D004517 7.7e-06 54.7 28 85.7


User provided reference genes

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