Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 1.5e-65 252.7 123 100.0
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.4e-63 246.1 123 96.7
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 2.0e-62 242.3 123 95.1
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 1.9e-60 235.7 122 92.6
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 5.4e-60 234.2 123 90.2
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 5.4e-60 234.2 123 92.7
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.2e-59 233.0 123 91.9
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 1.2e-59 233.0 123 90.2
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 1.6e-59 232.6 123 91.9
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 4.6e-59 231.1 136 85.3
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 1.0e-58 229.9 131 89.3
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 1.7e-58 229.2 122 89.3
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 1.5e-57 226.1 140 81.4
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 2.8e-56 221.9 123 85.4
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 9.9e-54 213.4 106 96.2
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 4.9e-53 211.1 123 81.3
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 1.9e-52 209.1 123 80.5
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 2.4e-52 208.8 115 86.1
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 7.1e-52 207.2 123 80.5
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 9.3e-52 206.8 123 76.4
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 9.3e-52 206.8 121 80.2
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 9.3e-52 206.8 123 80.5
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 1.2e-51 206.5 106 94.3
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 78.9
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 1.6e-51 206.1 123 78.9
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 4.6e-51 204.5 121 80.2
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 4.6e-51 204.5 126 78.6
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 6.0e-51 204.1 123 78.0
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 7.8e-51 203.8 123 78.0
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 7.8e-51 203.8 126 77.8
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.0e-50 203.4 123 78.0
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.3e-50 203.0 105 92.4
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.3e-50 203.0 126 77.8
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 1.3e-50 203.0 123 75.6
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.7e-50 202.6 123 77.2
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.7e-50 202.6 123 76.4
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 2.3e-50 202.2 123 75.6
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 2.3e-50 202.2 121 79.3
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 3.0e-50 201.8 117 80.3
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 5.1e-50 201.1 123 75.6
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 5.1e-50 201.1 123 74.8
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.1e-49 199.9 123 77.2
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.1e-49 199.9 121 76.0
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 1.1e-49 199.9 123 76.4
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 1.5e-49 199.5 122 76.2
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.9e-49 199.1 115 80.9
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.9e-49 199.1 115 80.9
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.9e-49 199.1 115 80.9
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 1.9e-49 199.1 115 80.9
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 2.5e-49 198.7 120 76.7
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.5e-49 198.7 123 76.4
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 5.6e-49 197.6 122 75.4
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 7.3e-49 197.2 120 76.7
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 9.6e-49 196.8 122 76.2
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.3e-48 196.4 115 80.0
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 1.3e-48 196.4 123 74.8
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 1.3e-48 196.4 117 76.1
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 1.6e-48 196.1 123 73.2
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 1.6e-48 196.1 123 76.4
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 2.1e-48 195.7 123 74.0
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 2.1e-48 195.7 123 72.4
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 2.1e-48 195.7 122 74.6
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 2.8e-48 195.3 123 75.6
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 2.8e-48 195.3 123 74.0
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 2.8e-48 195.3 115 80.0
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 2.8e-48 195.3 115 80.0
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 2.8e-48 195.3 123 74.0
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 6.2e-48 194.1 116 78.4
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 6.2e-48 194.1 123 74.8
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 8.1e-48 193.7 116 77.6
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 1.1e-47 193.4 123 74.0
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.4e-47 193.0 123 72.4
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 1.8e-47 192.6 106 89.6
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 1.8e-47 192.6 106 89.6
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 1.8e-47 192.6 106 89.6
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.8e-47 192.6 115 80.0
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.8e-47 192.6 122 74.6
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.8e-47 192.6 123 73.2
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 2.4e-47 192.2 123 73.2
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 3.1e-47 191.8 123 73.2
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 5.3e-47 191.0 121 73.6
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 6.9e-47 190.7 122 72.1
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 9.0e-47 190.3 116 75.9
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 4.5e-46 188.0 116 75.0
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 4.5e-46 188.0 123 71.5
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 7.6e-46 187.2 121 71.1
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 9.9e-46 186.8 123 71.5
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 1.7e-45 186.0 119 72.3
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 2.2e-45 185.7 123 73.2
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 2.9e-45 185.3 123 69.9
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 3.8e-45 184.9 121 71.1
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 3.8e-45 184.9 119 71.4
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 4.9e-45 184.5 123 69.1
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 6.4e-45 184.1 122 73.0
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 6.4e-45 184.1 122 73.0
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.1e-44 183.3 123 68.3
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 1.4e-44 183.0 118 74.6
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.9e-44 182.6 121 70.2
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.2e-44 181.8 104 80.8
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 3.2e-44 181.8 116 73.3
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 9.3e-44 180.3 105 78.1
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 3.0e-42 175.3 103 78.6
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 3.9e-42 174.9 104 76.0
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 3.9e-42 174.9 104 76.0
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 5.1e-42 174.5 109 76.1
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.9e-41 172.6 104 75.0
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 2.5e-41 172.2 104 76.0
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 5.6e-41 171.0 104 76.0
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 1.6e-40 169.5 123 74.0
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 3.7e-40 168.3 99 78.8
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 6.2e-40 167.5 97 79.4
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 6.2e-40 167.5 98 80.6
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 8.1e-40 167.2 112 67.9
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 1.4e-39 166.4 113 69.0
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 2.4e-39 165.6 104 74.0
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.1e-39 165.2 106 70.8
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 4.0e-39 164.9 106 70.8
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 4.0e-39 164.9 103 72.8
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 5.3e-39 164.5 120 65.0
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 6.9e-39 164.1 104 71.2
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 2.6e-38 162.2 107 71.0
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 5.8e-38 161.0 86 86.0
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 1.7e-37 159.5 121 66.9
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 2.1e-32 142.5 113 55.8
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 8.4e-29 130.6 111 55.0
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.6e-27 126.3 105 60.0
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 1.0e-26 123.6 86 68.6
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.1e-23 113.6 95 56.8
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 2.6e-22 109.0 63 77.8
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 3.9e-18 95.1 57 77.2
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.3e-17 92.0 68 63.2
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 2.8e-16 89.0 69 60.9
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 2.2e-13 79.3 64 54.7
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 1.0e-10 70.5 58 51.7
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.8e-10 69.7 41 65.9
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 3.4e-06 55.5 39 64.1


User provided reference genes

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