Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 8.3e-176 621.7 850 100.0
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 2.1e-142 510.8 436 97.2
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 5.8e-137 492.7 437 93.8
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 2.9e-136 490.3 437 93.6
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 1.9e-135 487.6 276 92.0
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 2.8e-115 420.6 447 77.9
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 3.1e-114 417.2 436 77.3
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 6.9e-114 416.0 276 75.7
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 7.4e-108 396.0 279 72.8
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.4e-106 391.7 276 71.7
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 2.8e-91 340.9 276 63.0
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 1.3e-88 332.0 281 63.0
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 6.2e-54 216.9 263 44.9
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 1.4e-53 215.7 279 45.5
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 6.8e-53 213.4 267 45.3
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 1.7e-51 208.8 280 44.3
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 2.2e-51 208.4 225 48.9
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 4.9e-51 207.2 261 44.4
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 4.9e-51 207.2 280 43.9
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 3.2e-50 204.5 262 43.5
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 4.6e-49 200.7 262 43.5
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 7.8e-49 199.9 152 69.7
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 1.7e-48 198.7 269 42.8
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 1.7e-48 198.7 279 41.6
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 3.9e-48 197.6 112 82.1
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 1.1e-47 196.1 266 42.9
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 1.5e-47 195.7 273 41.8
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 1.5e-47 195.7 224 46.0
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 3.3e-47 194.5 255 43.9
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 4.3e-47 194.1 279 39.8
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 2.8e-46 191.4 224 44.2
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 6.2e-46 190.3 265 40.8
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.8e-45 188.7 242 43.8
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.8e-45 188.7 242 43.0
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 3.1e-45 188.0 242 43.8
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 9.0e-45 186.4 260 40.8
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.0e-44 185.3 242 42.6
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 3.4e-44 184.5 285 40.4
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 4.9e-43 180.6 248 41.5
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 2.4e-42 178.3 194 46.4
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 1.2e-41 176.0 262 40.1
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 3.5e-41 174.5 271 41.3
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 1.0e-40 172.9 290 37.2
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.0e-40 172.9 206 45.1
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 2.3e-40 171.8 230 41.3
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 2.5e-39 168.3 261 40.6
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 4.8e-38 164.1 258 39.1
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 8.1e-38 163.3 226 36.7
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 1.1e-37 162.9 277 36.1
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 1.4e-37 162.5 199 44.2
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 2.4e-37 161.8 224 39.7
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 1.2e-36 159.5 94 86.2
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 2.0e-36 158.7 206 39.3
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 7.6e-36 156.8 273 36.6
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 7.6e-36 156.8 206 39.3
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.3e-35 156.0 90 82.2
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 3.2e-34 151.4 193 41.5
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 7.1e-34 150.2 225 36.0
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 1.6e-33 149.1 274 35.0
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.0e-32 146.4 259 34.0
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 1.0e-32 146.4 268 36.9
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 1.8e-32 145.6 221 39.8
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 2.5e-31 141.7 199 38.7
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 5.6e-31 140.6 167 42.5
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 1.6e-30 139.0 220 37.7
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 2.4e-29 135.2 172 43.0
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 1.2e-28 132.9 116 56.0
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 2.6e-28 131.7 184 39.1
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 4.5e-28 131.0 91 78.0
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 1.5e-23 115.9 152 40.1
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 1.4e-21 109.4 104 53.8
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 6.9e-21 107.1 152 42.1
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 1.0e-19 103.2 94 52.1
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 5.5e-18 97.4 193 37.8
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 1.2e-17 96.3 162 35.2
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 1.6e-17 95.9 94 46.8
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 3.9e-16 91.3 117 37.6
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 8.7e-16 90.1 95 42.1
BcaC05g25268 Brassica carinata HOM05D007623 ORTHO05D009641 7.4e-15 87.0 44 100.0
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 7.4e-15 87.0 95 44.2
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 7.4e-15 87.0 137 35.8
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 9.7e-15 86.7 94 43.6
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 8.2e-14 83.6 178 28.7
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.1e-13 83.2 94 41.5
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 1.9e-10 72.4 205 26.8
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 4.2e-10 71.2 186 28.0
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 4.2e-10 71.2 196 26.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 9.4e-10 70.1 222 26.1
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 2.1e-09 68.9 205 26.3
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 2.7e-09 68.6 196 25.5
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 6.1e-09 67.4 205 25.9
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 1.9e-07 62.4 162 26.5
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 7.4e-07 60.5 180 26.1
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 1.7e-06 59.3 151 27.2


User provided reference genes

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