Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 1.1e-59 233.0 113 100.0
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 1.1e-59 233.0 113 100.0
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 1.1e-59 233.0 113 100.0
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 2.7e-58 228.4 113 97.3
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 2.7e-58 228.4 113 97.3
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 4.5e-53 211.1 113 90.3
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 3.7e-47 191.4 111 82.9
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 4.5e-45 184.5 113 79.6
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 5.9e-45 184.1 114 80.7
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 3.8e-44 181.4 113 78.8
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 5.0e-44 181.0 114 79.8
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 8.5e-44 180.3 111 81.1
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 8.5e-44 180.3 111 81.1
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 8.5e-44 180.3 111 81.1
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 3.2e-43 178.3 105 81.9
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 1.2e-42 176.4 105 81.0
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 3.0e-41 171.8 114 75.4
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 3.0e-41 171.8 105 80.0
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 3.0e-41 171.8 105 80.0
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 8.8e-41 170.2 113 75.2
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 1.5e-40 169.5 114 74.6
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 7.2e-35 150.6 113 69.9
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 4.7e-34 147.9 113 69.0
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 4.4e-32 141.4 77 88.3
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 4.0e-25 118.2 70 78.6
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 5.9e-21 104.4 81 56.8
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 8.6e-20 100.5 113 46.0
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 1.9e-19 99.4 111 45.9
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 9.5e-19 97.1 105 45.7
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 1.2e-18 96.7 84 48.8
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 3.6e-18 95.1 107 46.7
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 4.7e-18 94.7 107 46.7
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 4.7e-18 94.7 110 43.6
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 8.0e-18 94.0 100 44.0
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 8.0e-18 94.0 102 51.0
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 1.1e-17 93.6 98 48.0
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 1.4e-17 93.2 102 43.1
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.4e-17 93.2 106 45.3
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 3.1e-17 92.0 106 46.2
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 5.2e-17 91.3 96 46.9
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 6.8e-17 90.9 81 51.9
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 2.6e-16 89.0 84 46.4
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 2.6e-16 89.0 80 48.8
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 2.6e-16 89.0 103 44.7
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 2.6e-16 89.0 103 44.7
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 5.8e-16 87.8 91 44.0
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 5.8e-16 87.8 102 46.1
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 5.8e-16 87.8 112 41.1
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 7.5e-16 87.4 106 44.3
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 7.5e-16 87.4 113 39.8
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.3e-15 86.7 101 43.6
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 2.9e-15 85.5 106 39.6
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 3.7e-15 85.1 111 41.4
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 1.1e-14 83.6 82 48.8
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.9e-14 82.8 111 40.5
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 1.9e-14 82.8 106 40.6
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 2.4e-14 82.4 107 41.1
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 2.4e-14 82.4 107 41.1
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 3.2e-14 82.0 100 41.0
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 4.1e-14 81.6 109 39.4
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 4.1e-14 81.6 73 46.6
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 9.2e-14 80.5 69 50.7
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.6e-13 79.7 111 39.6
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 1.6e-13 79.7 104 40.4
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 4.6e-13 78.2 74 48.6
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 6.0e-13 77.8 101 44.6
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 6.0e-13 77.8 98 42.9
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 1.3e-12 76.6 110 39.1
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 6.6e-12 74.3 109 40.4
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 8.6e-12 73.9 104 39.4
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 8.6e-12 73.9 109 34.9
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 1.1e-11 73.6 69 46.4
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 4.3e-11 71.6 111 39.6
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 8.1e-10 67.4 89 37.1
BolC8t49147H Brassica oleracea HOM05D007926 ORTHO05D009983 1.4e-09 66.6 37 83.8
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 3.1e-09 65.5 110 34.5
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 8.9e-09 63.9 111 33.3
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 1.2e-08 63.5 58 43.1
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 4.4e-08 61.6 100 36.0
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 9.9e-08 60.5 76 39.5
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 2.2e-07 59.3 66 42.4
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 4.1e-06 55.1 109 33.9


User provided reference genes

Program Settings